Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 5.0e-89 331.3 189 100.0
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.3e-81 306.6 189 93.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 3.2e-67 258.8 191 80.6
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 1.2e-63 246.9 189 80.4
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.8e-62 243.0 187 74.9
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 5.8e-61 238.0 190 78.4
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.9e-59 233.0 206 71.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 4.1e-59 231.9 206 71.8
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 7.0e-59 231.1 191 76.4
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 2.1e-58 229.6 206 70.4
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.7e-57 226.5 191 78.0
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 5.1e-57 224.9 189 74.1
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 7.3e-56 221.1 208 72.1
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.1e-54 217.2 207 65.7
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 4.3e-48 195.3 206 66.0
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.8e-46 189.9 190 62.6
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-46 189.5 155 80.0
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 2.1e-39 166.4 207 58.9
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 2.1e-39 166.4 207 58.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.8e-39 166.0 203 54.7
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 2.4e-38 162.9 203 54.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 9.0e-38 161.0 200 50.0
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.0e-37 159.8 206 53.9
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 4.4e-37 158.7 206 59.7
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 7.6e-37 157.9 206 54.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 9.9e-37 157.5 207 53.6
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.7e-36 156.8 208 56.2
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.2e-36 156.4 208 52.9
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-35 153.7 199 55.3
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-35 153.7 199 54.8
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.9e-35 153.3 205 58.5
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.2e-35 152.5 188 51.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 5.4e-35 151.8 203 52.2
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.6e-34 150.2 202 51.0
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.1e-34 149.8 147 73.5
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 3.5e-34 149.1 207 58.0
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.0e-33 147.5 208 51.4
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 3.0e-33 146.0 196 51.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.0e-33 146.0 197 52.8
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.0e-33 146.0 197 52.8
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.0e-33 146.0 194 51.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.1e-33 145.2 189 57.1
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 5.1e-33 145.2 201 52.2
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.6e-33 144.8 206 55.3
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.7e-33 144.4 196 53.1
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.1e-32 144.1 207 55.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.5e-32 143.7 206 54.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.5e-32 143.7 197 52.3
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.9e-32 143.3 195 54.9
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.9e-32 143.3 205 51.7
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.9e-32 143.3 178 57.3
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 3.3e-32 142.5 196 51.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.3e-32 142.5 207 52.2
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.3e-32 142.1 189 56.6
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 9.6e-32 141.0 181 56.4
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.6e-32 141.0 197 53.3
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-31 139.8 189 56.1
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 2.8e-31 139.4 208 49.5
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 3.6e-31 139.0 195 46.2
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 8.1e-31 137.9 203 49.8
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.1e-31 137.9 203 49.3
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.1e-31 137.9 204 49.5
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.1e-30 137.5 207 53.1
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 3.1e-30 136.0 204 49.0
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.0e-30 135.6 191 52.9
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 5.3e-30 135.2 207 52.7
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.3e-30 135.2 207 52.7
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 5.3e-30 135.2 207 54.6
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.9e-30 134.8 191 52.9
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 6.9e-30 134.8 144 66.0
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.5e-29 133.7 207 52.7
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.5e-29 133.7 191 52.4
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.5e-29 133.7 207 52.2
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.4e-29 132.5 204 48.5
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.4e-29 132.5 204 48.5
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.4e-29 132.5 207 54.1
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.4e-29 132.5 206 52.9
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 7.6e-29 131.3 201 42.8
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 7.6e-29 131.3 198 50.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 9.9e-29 131.0 207 51.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 9.9e-29 131.0 197 52.8
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.7e-28 130.2 195 42.1
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.2e-28 129.8 201 42.3
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.9e-28 129.4 193 49.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.9e-28 129.4 196 42.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.9e-28 128.6 188 51.1
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.4e-28 127.9 204 44.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.4e-28 127.9 204 44.6
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.1e-27 127.5 204 47.5
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.4e-27 127.1 204 48.0
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.9e-27 126.7 189 45.5
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.4e-27 126.3 207 51.2
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 3.2e-27 125.9 200 50.5
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 4.2e-27 125.6 188 50.5
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.4e-27 125.2 204 49.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 5.4e-27 125.2 205 47.3
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 5.4e-27 125.2 198 47.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 9.3e-27 124.4 177 44.6
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.7e-26 122.9 206 47.6
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.5e-26 122.5 190 46.3
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 6.0e-26 121.7 199 48.2
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.9e-26 121.3 181 53.6
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 7.9e-26 121.3 195 47.2
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.8e-25 120.2 192 43.2
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.3e-25 119.8 188 45.2
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 8.7e-25 117.9 189 43.9
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 8.7e-25 117.9 189 44.4
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.1e-24 117.5 139 50.4
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.5e-24 117.1 180 47.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.9e-24 116.7 180 50.6
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 2.5e-24 116.3 206 45.6
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 4.3e-24 115.5 194 45.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.3e-24 115.5 198 46.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 5.6e-24 115.2 195 45.1
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 7.4e-24 114.8 190 44.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 7.4e-24 114.8 248 34.7
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.6e-24 114.4 189 43.9
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.3e-23 114.0 192 47.4
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.6e-23 113.6 174 44.3
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.8e-23 112.8 189 44.4
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 3.7e-23 112.5 194 43.8
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 6.2e-23 111.7 195 49.2
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.1e-22 110.9 200 51.5
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.4e-22 110.5 183 41.5
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.4e-22 110.5 185 48.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.0e-22 109.0 196 45.4
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.3e-22 108.6 185 42.2
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 6.9e-22 108.2 184 48.9
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.0e-22 107.8 199 39.7
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-21 107.5 181 44.2
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.2e-21 107.5 183 42.6
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.5e-21 107.1 176 43.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 2.0e-21 106.7 181 38.7
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.0e-21 106.7 190 41.1
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.6e-21 106.3 199 40.2
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 4.5e-21 105.5 185 45.4
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 4.5e-21 105.5 181 45.3
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 5.8e-21 105.1 196 42.9
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 7.6e-21 104.8 194 39.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 7.6e-21 104.8 190 43.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 7.6e-21 104.8 176 42.0
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.9e-20 102.8 176 43.2
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.9e-20 102.1 195 45.1
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.1e-19 100.9 185 44.3
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-19 100.9 169 45.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-19 100.9 173 43.9
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.4e-19 100.5 197 51.3
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.5e-19 98.6 176 42.6
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 9.3e-19 97.8 110 66.4
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-18 97.4 193 40.9
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.6e-18 97.1 167 44.9
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.7e-18 96.3 197 46.7
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.0e-18 95.1 171 45.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.8e-17 93.6 130 48.5
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.8e-17 93.6 169 46.2
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.8e-17 93.6 202 43.6
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.3e-17 93.2 125 48.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 2.3e-17 93.2 195 46.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.0e-17 92.8 207 45.4
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.1e-17 92.0 170 42.9
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 5.1e-17 92.0 181 51.9
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.1e-17 92.0 102 53.9
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 1.9e-16 90.1 179 40.2
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.6e-16 88.6 199 45.7
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 5.6e-16 88.6 195 45.6
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.1e-15 86.7 198 44.9
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 6.2e-15 85.1 201 44.3
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.8e-14 83.6 197 46.2
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 5.3e-14 82.0 98 63.3
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 6.9e-14 81.6 196 48.5
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.0e-13 80.1 180 36.1
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 5.8e-13 78.6 101 53.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 5.8e-13 78.6 101 53.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.6e-13 78.2 105 61.0
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.9e-12 76.3 189 46.0
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.2e-11 72.4 92 51.1
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 3.5e-10 69.3 171 45.0
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.9e-09 65.9 120 59.2
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 5.7e-08 62.0 126 32.5
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.3e-07 60.8 77 80.5
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 2.8e-07 59.7 77 53.2
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 2.4e-06 56.6 88 69.3


User provided reference genes

Program Settings