Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 2.7e-143 511.9 245 100.0
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 5.4e-136 487.6 244 95.5
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 4.6e-111 404.8 244 79.9
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 4.8e-108 394.8 244 77.9
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 1.5e-93 346.7 246 68.7
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 1.4e-91 340.1 265 65.3
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 4.4e-85 318.5 250 64.8
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 8.2e-84 314.3 257 62.3
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 5.3e-83 311.6 250 65.2
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 1.0e-81 307.4 250 64.4
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 4.1e-67 258.8 216 61.6
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 9.8e-61 237.7 253 50.6
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 1.5e-56 223.8 216 55.6
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 4.7e-55 218.8 258 48.1
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 9.8e-53 211.1 261 45.2
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 8.3e-52 208.0 261 44.8
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 4.1e-51 205.7 253 42.7
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 7.0e-51 204.9 242 45.0
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 3.5e-50 202.6 265 42.6
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 1.3e-49 200.7 253 45.1
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 2.9e-49 199.5 258 44.2
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 8.6e-49 198.0 260 43.1
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 3.6e-47 192.6 253 44.3
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 4.7e-47 192.2 247 43.3
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 6.1e-47 191.8 261 41.8
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 1.0e-46 191.0 262 42.0
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 1.0e-46 191.0 259 41.3
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 1.4e-46 190.7 262 40.8
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 2.3e-46 189.9 262 41.6
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 4.0e-46 189.1 267 40.8
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 4.0e-46 189.1 246 43.9
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 5.2e-46 188.7 261 40.2
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 1.5e-45 187.2 266 38.7
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 1.5e-45 187.2 259 40.9
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 1.5e-45 187.2 242 42.1
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.5e-45 187.2 242 42.1
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 1.5e-45 187.2 262 40.8
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 4.4e-45 185.7 260 38.5
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.5e-45 184.9 247 41.7
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 9.8e-45 184.5 247 41.3
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 6.4e-44 181.8 262 40.1
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 8.3e-44 181.4 247 40.5
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 1.4e-43 180.6 262 38.9
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 3.2e-43 179.5 260 38.1
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 7.0e-43 178.3 260 40.8
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 1.2e-42 177.6 261 41.4
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 3.5e-42 176.0 262 37.8
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 2.3e-41 173.3 252 38.9
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 3.0e-41 172.9 272 34.9
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 6.6e-41 171.8 268 37.3
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 8.6e-41 171.4 259 37.5
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 1.1e-40 171.0 260 38.1
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 1.5e-40 170.6 259 37.5
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 1.9e-40 170.2 254 38.2
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 3.3e-40 169.5 257 38.1
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 5.6e-40 168.7 262 38.9
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 5.6e-40 168.7 262 38.9
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 1.2e-39 167.5 282 35.5
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 3.6e-39 166.0 264 38.3
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.4e-38 164.1 253 37.9
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 1.8e-38 163.7 254 38.2
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 1.8e-38 163.7 255 38.0
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 2.3e-38 163.3 264 36.0
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 4.0e-38 162.5 266 35.3
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 5.2e-38 162.2 262 35.9
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.2e-37 161.0 259 35.1
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 1.2e-37 161.0 252 38.9
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 1.5e-37 160.6 262 38.9
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 1.4e-35 154.1 252 36.5
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 4.1e-35 152.5 260 33.5
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 4.1e-35 152.5 264 33.7
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 5.4e-35 152.1 254 35.8
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 1.2e-34 151.0 257 37.0
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 1.1e-32 144.4 174 46.6
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 2.5e-32 143.3 257 34.2
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 7.3e-32 141.7 254 32.3
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 4.7e-31 139.0 262 34.0
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 8.9e-30 134.8 259 32.4
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 1.2e-29 134.4 250 33.2
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 2.0e-29 133.7 259 32.0
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.9e-27 127.1 259 32.4
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 1.9e-27 127.1 262 34.0
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 2.1e-26 123.6 256 31.6
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 2.3e-25 120.2 263 30.8
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 1.2e-23 114.4 259 30.1
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 2.8e-23 113.2 260 29.6
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 3.6e-23 112.8 259 29.7
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 1.4e-22 110.9 260 30.4
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 1.8e-22 110.5 257 31.1
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 3.1e-22 109.8 257 31.9
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 3.1e-22 109.8 257 31.9
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 1.2e-21 107.8 256 28.5
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 4.4e-21 105.9 261 29.1
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 5.8e-21 105.5 260 29.2
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 5.8e-21 105.5 260 29.2
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 1.3e-20 104.4 252 31.3
SEGI_33865 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 4.9e-20 102.4 262 31.7
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 1.2e-18 97.8 248 28.6
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 1.0e-17 94.7 260 30.4
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 1.7e-17 94.0 248 30.6
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 5.6e-16 89.0 104 44.2
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 1.5e-13 80.9 228 29.4
SMO011G0047 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 3.9e-09 66.2 234 27.4
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 1.6e-07 60.8 281 25.3
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 2.8e-07 60.1 68 42.6
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 2.4e-06 57.0 48 47.9


User provided reference genes

Program Settings