Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 2306.9 1253 100.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 2068.5 1255 89.2
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1903.6 1259 80.0
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1726.5 1299 73.4
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1678.7 1265 75.4
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1635.9 1276 73.5
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1583.9 1299 66.3
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1546.6 1309 69.2
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1538.1 1344 67.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1528.1 1242 67.0
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1502.6 1139 70.2
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1290.0 1115 62.8
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1278.8 1271 57.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 0.0e+00 1249.6 1285 57.0
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1233.4 1130 60.4
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1215.7 1264 55.1
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1202.2 1102 59.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1198.3 1284 54.3
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1194.1 1105 59.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1190.6 1105 58.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1189.1 1272 53.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1179.1 1106 59.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1172.5 1131 57.6
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1171.4 1104 57.6
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1167.1 1117 58.1
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1166.0 1273 53.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1163.3 1103 58.5
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1161.4 1103 58.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1314 52.5
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1151.3 1138 56.4
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1151.0 968 62.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1144.0 1112 56.5
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1140.6 1278 52.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1140.2 1282 51.9
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1123.6 1261 52.9
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1118.2 1104 56.7
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1115.9 1130 56.2
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1112.4 1098 57.2
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1109.4 1304 51.0
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1109.0 1174 55.9
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1105.9 1315 50.2
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1090.5 1278 50.2
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1087.0 1097 56.1
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1086.6 1105 55.2
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1085.1 1236 51.9
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1081.6 1100 54.5
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1080.1 1112 54.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1077.0 1261 51.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1075.8 1280 49.8
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.6e-312 1074.3 1102 55.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 2.9e-310 1068.9 1097 54.9
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 3.8e-310 1068.5 1098 54.6
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 7.2e-309 1064.3 1302 49.0
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.6e-308 1063.1 1355 48.0
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 6.7e-307 1057.7 1078 54.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.5e-306 1056.6 1106 54.1
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.5e-306 1055.8 1097 53.6
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 9.7e-306 1053.9 1258 50.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.3e-305 1053.5 1122 53.7
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.7e-305 1052.0 1355 47.6
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 3.7e-305 1052.0 1102 53.6
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.4e-303 1045.4 1116 53.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 7.7e-303 1044.3 1115 53.6
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.3e-302 1043.5 1020 57.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.1e-301 1040.4 1264 49.1
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.9e-301 1039.6 1103 53.5
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 9.4e-301 1037.3 1280 47.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 6.1e-300 1034.6 1104 53.0
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.8e-299 1033.1 1104 53.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1104 53.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1104 53.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 3.1e-296 1022.3 1160 51.0
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 5.9e-295 1018.1 1160 50.8
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.3e-294 1016.9 1303 48.7
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.3e-294 1016.9 1109 52.6
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.4e-291 1006.9 1261 48.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.4e-288 996.9 1414 44.8
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.4e-288 996.1 1141 50.6
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.6e-287 993.4 1114 51.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.5e-287 991.9 1097 51.8
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.3e-286 990.3 1151 49.1
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.5e-285 986.9 1129 50.1
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 5.5e-285 984.9 1158 48.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-284 983.8 956 56.9
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 4.8e-281 971.8 1150 49.4
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.1e-280 969.1 998 55.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.5e-277 960.3 947 56.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.5e-277 960.3 1315 46.0
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.3e-273 947.2 1117 49.9
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.4e-267 927.2 1166 49.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 7.5e-250 868.2 975 52.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.7e-249 867.1 1175 46.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.3e-245 852.8 994 50.4
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.6e-245 852.0 1151 46.3
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 8.1e-244 848.2 1139 44.8
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.3e-243 846.7 1144 45.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.1e-235 819.7 1089 45.2
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.8e-225 786.2 1107 42.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 9.6e-221 771.5 967 47.7
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 5.8e-210 735.7 1261 40.4
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-207 728.0 549 66.3
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.8e-203 714.1 942 45.9
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.0e-201 708.4 1106 41.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.8e-201 706.4 513 69.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.4e-187 661.4 522 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.4e-179 634.0 961 40.4
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.3e-169 601.7 1081 37.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.2e-150 536.6 1202 33.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.1e-139 502.3 677 43.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.4e-115 420.2 990 31.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.1e-95 355.1 639 44.3
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-84 318.9 250 64.8
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 3.7e-79 301.2 297 58.2
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.8e-60 238.0 178 68.5
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 4.5e-53 214.5 231 66.2
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-52 212.6 272 43.0
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 5.5e-51 207.6 170 64.1
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 2.6e-48 198.7 148 74.3
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.9e-44 185.3 610 27.5
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 3.8e-44 184.9 136 68.4
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 6.8e-33 147.5 118 65.3
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.4e-32 145.2 106 65.1
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.4e-30 139.0 108 68.5
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.0e-29 136.0 69 92.8
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 2.3e-28 132.5 226 36.7
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 6.6e-28 131.0 140 55.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 8.0e-26 124.0 124 54.0
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 4.0e-25 121.7 84 64.3
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 6.4e-23 114.4 121 49.6
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 4.1e-22 111.7 117 50.4
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.9e-19 102.8 406 28.6
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.5e-19 102.4 120 47.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.6e-18 99.8 125 46.4
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.9e-15 89.0 84 58.3
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.1e-11 77.0 87 43.7
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 7.3e-11 74.3 88 50.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 9.5e-11 73.9 93 43.0
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.4e-09 70.1 40 82.5
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 3.8e-07 62.0 54 57.4
HanXRQChr01g0002611 Helianthus annuus HOM05D005400 ORTHO05D006668 9.2e-06 57.4 82 42.7


User provided reference genes

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