Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 0.0e+00 1182.5 613 100.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 0.0e+00 1123.2 613 95.1
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 0.0e+00 1077.0 613 90.5
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.3e-290 1002.7 616 84.7
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 5.4e-286 987.3 618 83.2
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 5.0e-271 937.6 623 79.5
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.1e-270 936.4 616 80.0
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.3e-268 929.5 633 78.0
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.3e-268 929.5 633 78.0
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.0e-260 903.3 609 77.3
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 2.3e-260 902.1 638 75.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 2.9e-255 885.2 613 74.9
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.2e-250 869.0 613 74.2
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 4.8e-250 867.8 613 74.1
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 6.3e-250 867.5 616 73.2
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 6.3e-250 867.5 619 72.9
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.4e-249 866.3 617 72.1
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 3.1e-249 865.1 610 73.6
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 7.7e-248 860.5 612 72.5
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 4.2e-246 854.7 632 72.3
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 9.4e-246 853.6 612 71.4
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.6e-245 851.7 614 72.1
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 6.1e-245 850.9 619 71.7
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.4e-244 849.7 632 71.2
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.0e-244 848.6 612 72.4
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.5e-243 846.3 612 72.5
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 9.7e-243 843.6 617 72.4
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 3.7e-242 841.6 613 72.3
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 4.1e-241 838.2 616 71.3
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 2.6e-240 835.5 615 70.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 5.9e-240 834.3 632 69.5
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.7e-239 832.8 615 70.6
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.7e-239 832.8 653 68.6
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 3.8e-239 831.6 621 70.0
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 8.5e-239 830.5 615 70.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.1e-238 830.1 614 71.5
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.5e-238 829.7 619 70.9
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.2e-238 828.2 614 72.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.2e-238 828.2 637 69.2
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.2e-238 827.4 614 71.3
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 7.2e-238 827.4 615 70.1
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 8.0e-237 823.9 617 69.9
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.4e-236 823.2 614 72.5
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.3e-236 822.4 628 70.1
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.0e-236 822.0 614 72.3
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.2e-236 821.2 617 70.7
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.5e-235 819.7 617 69.7
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.7e-235 817.8 615 70.1
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.7e-234 815.1 615 69.1
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.2e-232 810.1 628 69.4
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 2.2e-231 805.8 575 74.1
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.0e-231 804.7 644 67.5
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.5e-230 803.1 636 68.1
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.5e-230 803.1 623 69.8
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 5.5e-230 801.2 625 69.3
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.4e-228 796.6 639 67.0
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.3e-228 795.8 616 68.5
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.0e-228 795.0 636 67.8
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.4e-227 791.6 616 68.2
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 4.1e-225 785.0 633 67.1
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 4.1e-225 785.0 756 57.7
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 3.5e-224 781.9 507 77.5
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.3e-223 779.2 633 66.8
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 3.8e-223 778.5 639 66.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.1e-222 776.9 645 65.7
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.9e-222 776.2 635 67.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 4.2e-222 775.0 620 65.3
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 9.5e-222 773.9 622 65.8
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.6e-221 773.1 619 68.3
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 2.1e-221 772.7 650 65.5
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.8e-221 772.3 654 64.7
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.0e-220 770.4 634 68.3
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 8.9e-220 767.3 631 65.6
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 4.4e-219 765.0 633 67.1
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.3e-218 763.5 620 65.0
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.3e-218 763.5 642 65.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.7e-218 763.1 616 66.6
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 2.2e-218 762.7 632 64.6
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 3.7e-218 761.9 617 66.5
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 6.3e-218 761.1 620 64.8
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.4e-217 760.0 620 64.8
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.4e-217 758.1 633 64.1
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 5.4e-217 758.1 627 64.3
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 5.4e-217 758.1 622 65.9
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 7.0e-217 757.7 638 64.6
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.0e-216 756.1 633 65.7
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 3.5e-216 755.4 630 64.1
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.5e-214 750.0 620 64.7
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.5e-214 750.0 620 64.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.3e-214 748.8 619 66.6
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.2e-213 746.9 649 62.9
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.1e-213 746.1 621 66.2
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 4.7e-213 745.0 630 63.8
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.3e-212 742.7 614 64.8
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.3e-212 742.7 651 62.4
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.1e-212 742.3 615 65.5
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 6.8e-212 741.1 619 65.8
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.3e-210 736.9 641 62.6
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.2e-209 732.3 614 64.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.4e-209 731.5 617 62.9
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.6e-205 719.9 616 62.7
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.4e-201 706.8 489 73.8
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 2.5e-198 696.0 570 65.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 2.1e-197 693.0 639 61.7
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 9.2e-193 677.6 457 74.6
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-191 673.3 397 83.6
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.7e-191 673.3 638 57.2
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.9e-190 669.8 616 60.7
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 4.3e-190 668.7 611 60.4
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.4e-185 652.9 675 56.6
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 6.6e-183 644.8 431 75.6
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.1e-182 644.0 616 57.6
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.2e-177 625.9 623 58.1
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 6.0e-176 621.7 484 66.3
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.1e-168 596.7 633 55.9
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 6.0e-168 595.1 452 66.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 6.0e-168 595.1 555 59.6
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 3.0e-167 592.8 315 90.8
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 9.6e-166 587.8 461 65.7
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.7e-162 577.0 610 51.5
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.1e-161 574.3 364 77.5
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.3e-159 566.6 300 90.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.8e-157 558.9 614 53.4
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 3.1e-156 556.2 656 48.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.5e-155 553.9 645 49.8
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.9e-151 539.3 647 48.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.5e-147 527.3 682 46.5
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.9e-146 523.1 313 79.9
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 6.5e-130 468.8 315 73.3
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.2e-125 453.8 560 46.8
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 3.7e-125 453.0 301 73.8
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 5.5e-113 412.5 296 73.6
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.4e-102 376.3 260 70.4
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.4e-102 376.3 260 70.4
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 5.4e-84 316.2 242 74.4
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-64 251.1 228 62.3
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.0e-58 232.3 343 40.5
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.0e-37 162.5 169 58.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 9.3e-36 156.0 178 51.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.9e-31 139.8 87 74.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.7e-29 135.2 316 33.5
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 6.5e-29 133.3 193 47.7
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 7.2e-28 129.8 334 32.3
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.7e-24 118.6 160 55.0
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.2e-24 118.2 132 53.8
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.2e-20 104.4 141 52.5
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.4e-18 99.0 92 60.9
Ca_11944_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.4e-15 89.0 91 57.1
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 5.3e-15 87.0 65 69.2
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 1.2e-14 85.9 108 52.8
Ca_27140_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.0e-13 82.8 72 66.7
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.2e-12 77.8 132 42.4
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 9.4e-12 76.3 149 40.3
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 4.0e-10 70.9 149 38.9
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 2.8e-08 64.7 164 34.1


User provided reference genes

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