Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.5e-110 402.9 211 100.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.3e-98 363.2 209 91.4
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.2e-77 292.7 213 74.2
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 9.3e-76 287.3 209 75.1
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.2e-72 274.6 212 73.6
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 5.3e-71 271.6 214 70.1
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 9.0e-71 270.8 214 70.6
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 3.5e-67 258.8 212 67.0
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 4.8e-64 248.4 224 64.3
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 2.0e-62 243.0 216 65.7
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 6.9e-39 164.9 176 56.2
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.5e-38 163.7 186 52.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.5e-38 162.2 263 41.4
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 2.9e-37 159.5 151 56.3
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 5.0e-37 158.7 151 56.3
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.1e-36 157.5 178 52.8
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.9e-36 156.8 165 58.2
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.5e-36 156.4 197 47.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 3.2e-36 156.0 143 59.4
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 6.1e-35 151.8 186 50.0
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.4e-34 150.6 177 48.6
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.8e-34 150.2 278 39.9
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.3e-34 149.8 168 52.4
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 6.7e-34 148.3 179 50.8
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.1e-33 147.5 196 44.9
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.5e-33 147.1 155 54.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.5e-33 146.4 179 47.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 2.5e-33 146.4 171 53.2
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.5e-33 146.4 184 47.8
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.3e-32 144.1 146 54.8
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.3e-32 144.1 180 48.3
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.3e-32 144.1 175 51.4
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.2e-32 143.3 157 53.5
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 6.3e-32 141.7 143 54.5
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 8.2e-32 141.4 155 51.6
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.1e-31 141.0 157 53.5
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.4e-31 140.6 173 46.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.8e-31 140.2 182 47.3
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.8e-31 140.2 168 47.6
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 2.4e-31 139.8 175 47.4
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 3.1e-31 139.4 149 49.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.1e-31 139.0 177 46.9
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.3e-31 138.7 151 51.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 5.3e-31 138.7 182 47.8
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.2e-30 137.5 175 47.4
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.5e-30 137.1 180 46.7
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.5e-30 137.1 269 40.1
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.0e-30 136.7 143 50.3
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.0e-30 136.7 192 45.3
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.6e-30 136.3 143 51.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.4e-30 136.0 179 43.6
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 4.5e-30 135.6 182 46.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 4.5e-30 135.6 182 47.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.5e-30 135.6 166 48.2
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 5.9e-30 135.2 178 48.3
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 1.0e-29 134.4 173 47.4
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.3e-29 134.0 152 50.7
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.3e-29 134.0 181 44.8
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 2.9e-29 132.9 249 38.6
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.9e-29 132.9 178 45.5
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 6.5e-29 131.7 146 49.3
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 6.5e-29 131.7 273 36.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.5e-29 131.7 166 47.6
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 8.5e-29 131.3 179 42.5
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.1e-28 131.0 158 46.2
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.1e-28 131.0 184 46.2
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.1e-28 131.0 152 51.3
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.4e-28 130.6 138 58.0
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.4e-28 130.6 184 45.7
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.4e-28 130.6 149 50.3
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.5e-28 129.8 143 49.7
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.5e-28 129.8 171 48.0
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.5e-28 129.8 172 44.2
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.2e-28 129.4 191 41.4
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.2e-28 129.0 146 47.9
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 4.2e-28 129.0 182 44.5
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.5e-28 128.6 172 44.2
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 9.4e-28 127.9 142 49.3
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 9.4e-28 127.9 179 45.8
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.2e-27 127.5 185 42.2
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 2.7e-27 126.3 181 43.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 6.1e-27 125.2 146 47.9
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.9e-27 124.8 256 36.7
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.0e-26 124.4 146 47.3
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.4e-26 124.0 188 44.1
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.8e-26 123.6 151 47.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.3e-26 123.2 131 49.6
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.3e-26 123.2 180 44.4
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.3e-26 123.2 191 41.9
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.9e-26 122.5 188 43.6
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 9.7e-25 117.9 154 45.5
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.3e-24 117.5 272 33.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 8.2e-24 114.8 101 61.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.4e-23 114.0 173 42.2
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.4e-23 113.2 178 42.1
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 7.0e-23 111.7 140 45.0
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 9.1e-23 111.3 132 47.0
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 9.1e-23 111.3 132 47.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 7.7e-22 108.2 265 35.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 1.0e-21 107.8 139 43.2
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.7e-21 107.1 141 44.7
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.7e-21 107.1 172 40.1
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 5.0e-21 105.5 183 38.3
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 8.5e-21 104.8 184 39.1
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.9e-20 103.6 101 57.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.5e-20 103.2 143 42.0
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 5.5e-20 102.1 176 43.2
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 9.4e-20 101.3 196 32.7
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.6e-19 100.5 156 44.2
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.1e-19 100.1 244 29.9
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 3.6e-19 99.4 182 39.0
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.7e-19 99.0 181 39.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 4.7e-19 99.0 143 44.1
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.8e-18 97.1 205 37.1
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.0e-18 96.3 249 29.3
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 2.0e-17 93.6 144 41.0
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.3e-16 90.9 146 41.8
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.7e-16 90.5 251 29.1
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 5.3e-15 85.5 151 39.1
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 5.3e-15 85.5 238 32.4
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.2e-11 74.3 107 42.1
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.6e-11 73.9 117 41.9
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.1e-11 73.6 146 37.0
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 6.8e-10 68.6 95 42.1
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 3.7e-08 62.8 116 37.9
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.1e-07 61.2 189 30.7
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.1e-07 61.2 97 44.3
CARHR007140 Cardamine hirsuta HOM05D000136 ORTHO05D000080 3.1e-07 59.7 104 36.5
AT1G59860 Arabidopsis thaliana HOM05D000136 ORTHO05D000080 5.4e-07 58.9 104 34.6
AT1G07400 Arabidopsis thaliana HOM05D000136 ORTHO05D000080 7.0e-07 58.5 104 34.6
Lsat_1_v5_gn_5_171121 Lactuca sativa HOM05D000136 ORTHO05D000080 1.2e-06 57.8 116 33.6
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 1.6e-06 57.4 96 36.5
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.6e-06 57.4 89 41.6
BcaB06g28315 Brassica carinata HOM05D000136 ORTHO05D000080 2.7e-06 56.6 96 37.5
Carub.0001s0671 Capsella rubella HOM05D000136 ORTHO05D000080 2.7e-06 56.6 96 36.5
Carub.0004s1055 Capsella rubella HOM05D000136 ORTHO05D000080 2.7e-06 56.6 96 35.4
Carub.0002s0540 Capsella rubella HOM05D000136 ORTHO05D000080 4.5e-06 55.8 96 36.5
CARHR053220 Cardamine hirsuta HOM05D000136 ORTHO05D000080 4.5e-06 55.8 96 36.5
A05p15900 Brassica napus HOM05D000136 ORTHO05D000080 5.9e-06 55.5 98 34.7
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 5.9e-06 55.5 74 43.2
TPR.G27488 Trifolium pratense HOM05D000136 ORTHO05D000080 5.9e-06 55.5 123 34.1
Migut.F01306 Erythranthe guttata HOM05D000136 ORTHO05D000080 7.7e-06 55.1 95 34.7
Lalb_Chr12g0205411 Lupinus albus HOM05D000136 ORTHO05D000080 7.7e-06 55.1 125 32.8
Sp4g12220 Schrenkiella parvula HOM05D000136 ORTHO05D000080 7.7e-06 55.1 96 36.5


User provided reference genes

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