Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.7e-112 409.5 217 100.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.5e-84 315.8 174 96.6
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.6e-75 286.6 174 85.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.7e-72 276.6 174 84.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.5e-68 262.7 186 80.1
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.6e-67 258.8 183 79.2
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.4e-63 246.1 185 75.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.3e-61 240.4 178 77.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 5.1e-61 238.4 175 78.3
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.1e-60 237.3 178 76.4
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.5e-60 236.9 189 74.6
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.6e-59 232.3 193 72.5
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.2e-59 231.5 193 72.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 4.0e-58 228.8 178 74.7
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.6e-57 226.1 177 74.6
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 4.2e-55 218.8 180 73.3
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 4.2e-55 218.8 187 69.5
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.2e-54 217.2 197 67.5
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.6e-52 207.6 181 69.6
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 4.8e-51 205.3 182 68.7
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 4.8e-51 205.3 193 65.3
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.8e-50 203.4 191 64.9
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.8e-50 203.4 196 63.8
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 3.1e-50 202.6 174 68.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 5.3e-50 201.8 188 62.8
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 6.9e-50 201.4 183 66.7
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 9.0e-50 201.1 178 66.3
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 3.4e-49 199.1 186 64.5
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.6e-49 198.0 189 65.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 9.9e-49 197.6 190 63.7
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.3e-48 197.2 191 64.4
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.2e-48 196.4 190 63.7
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.9e-48 196.1 194 62.9
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.8e-48 195.7 192 63.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.9e-48 195.3 191 63.9
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.1e-47 194.1 189 63.0
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.1e-47 194.1 183 65.0
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.9e-47 193.4 185 65.9
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.9e-47 193.4 187 63.6
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.9e-47 193.4 189 61.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.2e-47 192.2 188 65.4
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 5.4e-47 191.8 186 63.4
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 5.4e-47 191.8 172 67.4
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 9.3e-47 191.0 189 62.4
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.2e-46 190.7 180 62.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.0e-46 188.3 194 61.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 7.9e-46 188.0 176 64.2
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.0e-45 187.6 183 64.5
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.8e-45 186.8 194 60.8
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 3.0e-45 186.0 191 60.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 3.0e-45 186.0 189 63.5
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 3.9e-45 185.7 190 62.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 5.1e-45 185.3 192 61.5
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 6.7e-45 184.9 180 60.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.7e-45 184.5 187 62.6
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.1e-44 184.1 183 66.1
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 1.1e-44 184.1 185 62.2
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-44 183.7 176 63.6
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 4.3e-44 182.2 182 64.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 4.3e-44 182.2 178 65.7
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 7.4e-44 181.4 180 61.1
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 7.4e-44 181.4 185 64.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 9.6e-44 181.0 181 61.9
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.6e-44 181.0 176 64.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 9.6e-44 181.0 186 60.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.6e-43 180.3 176 65.9
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.6e-43 180.3 185 58.9
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.1e-43 179.9 175 65.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.1e-43 179.9 190 60.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.1e-43 179.9 179 62.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.1e-43 179.9 179 62.0
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 6.2e-43 178.3 182 63.2
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 6.2e-43 178.3 173 63.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 8.1e-43 177.9 183 61.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.1e-42 177.6 176 64.8
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.4e-42 177.2 175 64.6
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.4e-42 177.2 174 62.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.8e-42 176.8 182 63.7
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.8e-42 176.8 182 63.7
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.8e-42 176.8 184 62.0
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.4e-42 176.4 178 64.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.1e-42 176.0 188 59.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 4.0e-42 175.6 177 62.7
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.3e-42 175.3 177 63.3
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.9e-42 174.9 196 59.2
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-41 174.1 177 62.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.5e-41 173.7 175 65.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.6e-41 172.9 180 59.4
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.6e-41 172.9 174 62.1
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 3.4e-41 172.6 175 64.6
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 3.4e-41 172.6 183 62.3
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 3.4e-41 172.6 222 54.5
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 3.4e-41 172.6 176 61.9
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.8e-41 171.8 191 59.7
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 7.6e-41 171.4 134 72.4
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.9e-41 171.0 136 68.4
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.7e-40 170.2 174 59.2
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 2.2e-40 169.9 175 62.9
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 2.2e-40 169.9 190 58.4
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.2e-40 169.9 195 52.8
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 6.4e-40 168.3 179 63.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.4e-40 168.3 194 56.7
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.4e-40 167.9 177 61.0
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.1e-39 167.5 181 58.6
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.9e-39 166.8 180 58.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.9e-39 166.8 184 56.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.9e-39 166.8 150 67.3
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.9e-39 166.8 177 61.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.6e-38 163.7 179 59.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.6e-38 163.7 184 57.1
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 7.9e-38 161.4 88 88.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.8e-37 160.2 158 61.4
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.9e-36 156.8 186 57.5
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.9e-36 156.8 199 50.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.5e-36 156.4 183 55.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.5e-36 156.4 158 58.9
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 3.3e-36 156.0 180 57.8
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 5.6e-36 155.2 204 50.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.1e-35 153.3 185 54.6
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.4e-34 150.6 171 57.3
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 2.4e-34 149.8 213 52.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.5e-33 147.1 95 77.9
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.7e-32 143.7 199 46.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.1e-31 141.0 163 57.1
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 6.7e-29 131.7 75 84.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.1e-28 131.0 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 4.3e-28 129.0 69 82.6
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 2.4e-26 123.2 97 69.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 9.0e-26 121.3 147 57.8
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-24 115.9 155 54.8
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 9.3e-23 111.3 82 63.4
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.7e-22 109.8 150 46.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.3e-21 107.5 68 77.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 5.1e-21 105.5 73 75.3
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.3e-20 102.4 177 41.8
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 4.8e-19 99.0 169 44.4
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 5.3e-18 95.5 147 48.3
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 6.9e-18 95.1 82 54.9
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.6e-17 93.2 80 52.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.7e-16 90.5 193 39.4
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 2.2e-16 90.1 166 45.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.6e-14 82.8 81 60.5
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 6.9e-10 68.6 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.9e-07 60.5 39 64.1


User provided reference genes

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