Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 4.5e-80 301.2 154 100.0
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 4.1e-73 278.1 153 92.8
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 5.0e-63 244.6 154 83.8
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.7e-58 229.6 154 79.9
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 9.8e-51 203.8 156 71.2
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 2.2e-50 202.6 157 71.3
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 4.6e-48 194.9 154 70.8
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 3.0e-47 192.2 154 68.2
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 5.0e-47 191.4 157 69.4
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 1.6e-45 186.4 157 66.2
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 1.3e-39 166.8 154 65.6
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 6.6e-39 164.5 154 64.9
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 1.5e-38 163.3 163 61.3
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 5.6e-38 161.4 163 62.0
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 8.1e-37 157.5 157 59.9
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 3.4e-35 152.1 126 65.9
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 7.6e-35 151.0 130 66.2
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.9e-33 146.4 131 66.4
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 1.9e-33 146.4 121 69.4
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 3.2e-33 145.6 128 64.1
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 4.1e-33 145.2 172 53.5
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 5.4e-33 144.8 158 58.2
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 5.4e-33 144.8 180 53.3
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 7.1e-33 144.4 125 65.6
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 1.2e-32 143.7 140 58.6
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 2.1e-32 142.9 136 61.0
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 3.5e-32 142.1 175 53.1
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 4.6e-32 141.7 164 54.9
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.7e-31 139.8 167 54.5
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 1.7e-31 139.8 149 59.7
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 2.3e-31 139.4 109 71.6
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 3.0e-31 139.0 131 64.1
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 6.6e-31 137.9 177 52.0
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 8.6e-31 137.5 155 56.1
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.5e-30 136.7 144 59.7
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.9e-30 136.3 144 59.7
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 1.9e-30 136.3 144 59.7
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.9e-30 136.3 122 64.8
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.9e-30 136.3 134 61.2
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 1.9e-30 136.3 129 61.2
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 3.3e-30 135.6 131 61.1
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 4.3e-30 135.2 124 63.7
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 4.3e-30 135.2 148 58.1
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 5.6e-30 134.8 86 84.9
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 7.3e-30 134.4 172 50.0
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 9.6e-30 134.0 129 62.0
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 9.6e-30 134.0 161 54.0
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 9.6e-30 134.0 122 64.8
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.2e-29 133.7 151 54.3
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.2e-29 133.7 151 54.3
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.6e-29 133.3 153 55.6
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 2.1e-29 132.9 100 73.0
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 2.1e-29 132.9 165 53.9
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.1e-29 132.9 133 58.6
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 2.8e-29 132.5 83 81.9
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 2.8e-29 132.5 110 68.2
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 2.8e-29 132.5 99 70.7
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 3.6e-29 132.1 160 55.6
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 3.6e-29 132.1 144 54.2
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 3.6e-29 132.1 87 79.3
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 4.7e-29 131.7 100 72.0
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 4.7e-29 131.7 87 80.5
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.2e-29 131.3 152 54.6
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.2e-29 131.3 152 54.6
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 6.2e-29 131.3 87 79.3
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 8.1e-29 131.0 124 56.5
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 8.1e-29 131.0 142 55.6
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 8.1e-29 131.0 142 55.6
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 8.1e-29 131.0 87 78.2
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 8.1e-29 131.0 93 75.3
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.1e-28 130.6 164 52.4
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 1.1e-28 130.6 113 65.5
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 1.4e-28 130.2 170 51.8
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 1.4e-28 130.2 119 63.0
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.8e-28 129.8 156 51.9
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.8e-28 129.8 156 51.9
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 1.8e-28 129.8 122 59.8
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 1.8e-28 129.8 87 74.7
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 1.8e-28 129.8 100 69.0
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 4.0e-28 128.6 83 78.3
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 4.0e-28 128.6 129 59.7
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 4.0e-28 128.6 88 76.1
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 4.0e-28 128.6 165 50.9
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 4.0e-28 128.6 100 72.0
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 6.8e-28 127.9 86 76.7
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 6.8e-28 127.9 128 60.2
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 8.9e-28 127.5 111 64.0
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 8.9e-28 127.5 119 62.2
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 8.9e-28 127.5 119 62.2
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.5e-27 126.7 96 69.8
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.5e-27 126.7 96 69.8
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.0e-27 126.3 144 52.8
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 2.6e-27 125.9 96 69.8
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 3.4e-27 125.6 170 48.8
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 4.4e-27 125.2 100 69.0
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 5.8e-27 124.8 81 79.0
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 5.8e-27 124.8 137 57.7
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 2.2e-26 122.9 104 65.4
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 2.2e-26 122.9 170 48.2
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 2.2e-26 122.9 83 77.1
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 2.9e-26 122.5 170 47.6
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.1e-25 120.6 137 57.7
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 2.4e-25 119.4 137 56.2
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 9.3e-25 117.5 116 57.8
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 6.0e-24 114.8 100 59.0
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 2.3e-23 112.8 162 46.3
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.3e-22 109.0 81 69.1
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 3.3e-22 109.0 96 61.5
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 7.3e-22 107.8 65 84.6
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 9.6e-22 107.5 83 67.5
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 1.3e-21 107.1 82 68.3
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 2.9e-18 95.9 82 61.0
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.3e-15 86.3 87 56.3
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 1.1e-14 84.0 89 50.6
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.3e-14 82.4 87 54.0
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 3.3e-14 82.4 89 55.1
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 6.0e-08 61.6 58 56.9


User provided reference genes

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