Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G220400 Glycine max HOM05D007043 ORTHO05D008951 3.3e-101 371.7 186 100.0
Glyma.20G171100 Glycine max HOM05D007043 ORTHO05D008951 1.2e-95 353.2 186 95.2
Phvul.007G084700 Phaseolus vulgaris HOM05D007043 ORTHO05D008951 2.7e-87 325.5 186 85.5
VMungo0720G3009 Vigna mungo HOM05D007043 ORTHO05D008951 1.1e-85 320.1 186 83.9
arahy.Tifrunner.gnm1.ann1.T4LNKK Arachis hypogaea HOM05D007043 ORTHO05D008951 8.4e-81 303.9 186 80.6
arahy.Tifrunner.gnm1.ann1.7K1R9Z Arachis hypogaea HOM05D007043 ORTHO05D008951 9.3e-80 300.4 186 80.1
ClCG08G007230 Citrullus lanatus HOM05D007043 ORTHO05D008951 1.2e-79 300.1 186 77.4
Medtr1g097460 Medicago truncatula HOM05D007043 ORTHO05D008951 1.6e-79 299.7 186 78.5
Sed0011039 Sechium edule HOM05D007043 ORTHO05D008951 2.1e-79 299.3 184 77.7
Lj5g0012506 Lotus japonicus HOM05D007043 ORTHO05D008951 3.0e-78 295.4 186 78.0
Cfa018265 Carpinus fangiana HOM05D007043 ORTHO05D008951 1.9e-77 292.7 192 74.5
Lalb_Chr02g0141621 Lupinus albus HOM05D007043 ORTHO05D008951 1.9e-77 292.7 184 78.3
CsaV3_6G004900 Cucumis sativus L. HOM05D007043 ORTHO05D008951 2.5e-77 292.4 186 75.3
MELO3C019966.2 Cucumis melo HOM05D007043 ORTHO05D008951 4.3e-77 291.6 186 75.3
Psat6g189600 Pisum sativum HOM05D007043 ORTHO05D008951 5.6e-77 291.2 186 76.3
QL02p037061 Quercus lobata HOM05D007043 ORTHO05D008951 5.6e-77 291.2 192 74.0
Potri.005G198400 Populus trichocarpa HOM05D007043 ORTHO05D008951 2.8e-76 288.9 186 73.7
Ciclev10002599m.g Citrus clementina HOM05D007043 ORTHO05D008951 4.8e-76 288.1 186 74.2
Hma1.2p1_0678F.1_g202140 Hydrangea macrophylla HOM05D007043 ORTHO05D008951 6.2e-76 287.7 189 74.6
QL02p036540 Quercus lobata HOM05D007043 ORTHO05D008951 6.2e-76 287.7 193 73.1
MD10G1037900 Malus domestica HOM05D007043 ORTHO05D008951 1.4e-75 286.6 188 73.9
Haze_17823 Corylus avellana HOM05D007043 ORTHO05D008951 2.4e-75 285.8 187 75.4
CiPaw.15G011600 Carya illinoinensis HOM05D007043 ORTHO05D008951 6.9e-75 284.3 186 73.1
Eucgr.F02676 Eucalyptus grandis HOM05D007043 ORTHO05D008951 6.9e-75 284.3 188 72.9
Atru.chr13.1985 Acer truncatum HOM05D007043 ORTHO05D008951 1.2e-74 283.5 187 75.4
MD05G1035600 Malus domestica HOM05D007043 ORTHO05D008951 1.5e-74 283.1 188 72.9
SalBow6G0078 Salvia bowleyana HOM05D007043 ORTHO05D008951 5.8e-74 281.2 186 74.7
Thecc.08G163200 Theobroma cacao HOM05D007043 ORTHO05D008951 5.8e-74 281.2 186 71.0
GSVIVG01013701001 Vitis vinifera HOM05D007043 ORTHO05D008951 1.7e-73 279.6 186 71.5
Cpa.g.sc26.119 Carica papaya HOM05D007043 ORTHO05D008951 2.2e-73 279.3 186 71.5
Duzib093G0431 Durio zibethinus HOM05D007043 ORTHO05D008951 2.2e-73 279.3 186 71.0
Peaxi162Scf00360g00918 Petunia axillaris HOM05D007043 ORTHO05D008951 2.9e-73 278.9 188 71.8
TAR625G0503 Trochodendron aralioides HOM05D007043 ORTHO05D008951 3.8e-73 278.5 182 73.6
Migut.N02945 Erythranthe guttata HOM05D007043 ORTHO05D008951 6.5e-73 277.7 186 72.0
Aqoxy5G02008 Aquilegia oxysepala HOM05D007043 ORTHO05D008951 8.4e-73 277.3 186 70.4
RcHm_v2.0_Chr6g0273931 Rosa chinensis HOM05D007043 ORTHO05D008951 8.4e-73 277.3 185 74.1
THA.LOC104800095 Tarenaya hassleriana HOM05D007043 ORTHO05D008951 8.4e-73 277.3 183 71.6
Cc10_g06450 Coffea canephora HOM05D007043 ORTHO05D008951 1.4e-72 276.6 192 71.9
FAN15G1248 Fragaria x ananassa HOM05D007043 ORTHO05D008951 1.4e-72 276.6 185 72.4
FAN20G1550 Fragaria x ananassa HOM05D007043 ORTHO05D008951 1.4e-72 276.6 185 72.4
Prupe.8G043500 Prunus persica HOM05D007043 ORTHO05D008951 1.4e-72 276.6 186 71.5
FAN24G2827 Fragaria x ananassa HOM05D007043 ORTHO05D008951 1.9e-72 276.2 185 72.4
unitig_52.g17176 Utricularia gibba HOM05D007043 ORTHO05D008951 3.2e-72 275.4 184 71.2
Ca_10649_v3 Cicer arietinum L. HOM05D007043 ORTHO05D008951 4.2e-72 275.0 177 76.3
Hund26674 Selenicereus undatus HOM05D007043 ORTHO05D008951 2.1e-71 272.7 185 68.1
Solyc04g072039.1 Solanum lycopersicum HOM05D007043 ORTHO05D008951 2.1e-71 272.7 197 67.5
CAN.G1183.21 Capsicum annuum HOM05D007043 ORTHO05D008951 2.7e-71 272.3 201 68.2
CSS0028309 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 4.6e-71 271.6 185 75.7
Gohir.A06G112300 Gossypium hirsutum HOM05D007043 ORTHO05D008951 4.6e-71 271.6 186 68.3
CSS0014664 Camellia sinensis var. sinensis HOM05D007043 ORTHO05D008951 1.3e-70 270.0 185 75.1
Sopen04g028120 Solanum pennellii HOM05D007043 ORTHO05D008951 1.3e-70 270.0 197 67.5
SGA_v2.0_scaffold364G49970 Striga asiatica HOM05D007043 ORTHO05D008951 1.8e-70 269.6 184 70.1
CDE05G0687 Ceratophyllum demersum HOM05D007043 ORTHO05D008951 2.3e-70 269.2 184 68.5
TWI60G1299 Tripterygium wilfordii HOM05D007043 ORTHO05D008951 5.1e-70 268.1 184 70.1
vmacro21135 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 5.1e-70 268.1 187 72.2
vmacro22650 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 5.1e-70 268.1 187 72.2
ATR1120G076 Amborella trichopoda HOM05D007043 ORTHO05D008951 6.7e-70 267.7 186 68.3
Nitab4.5_0003178g0080 Nicotiana tabacum HOM05D007043 ORTHO05D008951 6.7e-70 267.7 192 69.8
PSO170G2334 Papaver somniferum HOM05D007043 ORTHO05D008951 6.7e-70 267.7 186 69.4
PGSC0003DMG400025055 Solanum tuberosum HOM05D007043 ORTHO05D008951 1.5e-69 266.5 199 66.8
Aa31LG4G8890 Aethionema arabicum HOM05D007043 ORTHO05D008951 3.3e-69 265.4 186 68.8
Gohir.D06G116500 Gossypium hirsutum HOM05D007043 ORTHO05D008951 1.6e-68 263.1 186 66.1
Gorai.010G134300 Gossypium raimondii HOM05D007043 ORTHO05D008951 1.6e-68 263.1 186 66.1
Ah.05g168310 Amaranthus hybridus HOM05D007043 ORTHO05D008951 4.8e-68 261.5 189 67.7
PSO210G5925 Papaver somniferum HOM05D007043 ORTHO05D008951 4.8e-68 261.5 186 67.7
A07p37900 Brassica napus HOM05D007043 ORTHO05D008951 1.1e-67 260.4 184 66.3
AL2G31320 Arabidopsis lyrata HOM05D007043 ORTHO05D008951 1.4e-67 260.0 181 68.5
CARHR291040 Cardamine hirsuta HOM05D007043 ORTHO05D008951 1.4e-67 260.0 184 67.9
BcaC08g46601 Brassica carinata HOM05D007043 ORTHO05D008951 1.8e-67 259.6 184 66.3
C06p45800 Brassica napus HOM05D007043 ORTHO05D008951 1.8e-67 259.6 184 66.3
Carub.0002s1851 Capsella rubella HOM05D007043 ORTHO05D008951 2.4e-67 259.2 184 65.2
AUR62034911 Chenopodium quinoa HOM05D007043 ORTHO05D008951 2.4e-67 259.2 187 65.8
HanXRQChr11g0320161 Helianthus annuus HOM05D007043 ORTHO05D008951 2.4e-67 259.2 189 66.1
vmacro22651 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.4e-67 259.2 201 67.7
Thhalv10019190m.g Eutrema salsugineum HOM05D007043 ORTHO05D008951 5.3e-67 258.1 181 66.9
BraA07t31355Z Brassica rapa HOM05D007043 ORTHO05D008951 6.9e-67 257.7 191 66.5
Os05g0182201 Oryza sativa ssp. japonica HOM05D007043 ORTHO05D008951 6.9e-67 257.7 181 68.0
SHI09106 Sapria himalayana HOM05D007043 ORTHO05D008951 1.2e-66 256.9 184 67.9
vmacro21134 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.6e-66 255.8 211 64.5
HPP92_024076 Vanilla planifolia HOM05D007043 ORTHO05D008951 2.6e-66 255.8 184 69.6
TAR625G0569 Trochodendron aralioides HOM05D007043 ORTHO05D008951 7.7e-66 254.2 182 68.7
AUR62026618 Chenopodium quinoa HOM05D007043 ORTHO05D008951 1.0e-65 253.8 185 65.9
EL10Ac8g19385 Beta vulgaris HOM05D007043 ORTHO05D008951 2.9e-65 252.3 190 64.7
ECA232G2240 Erigeron canadensis HOM05D007043 ORTHO05D008951 5.0e-65 251.5 182 63.7
BolC6t39632H Brassica oleracea HOM05D007043 ORTHO05D008951 6.5e-65 251.1 195 62.6
AT1G71750 Arabidopsis thaliana HOM05D007043 ORTHO05D008951 3.2e-64 248.8 195 62.1
DCAR_016685 Daucus carota HOM05D007043 ORTHO05D008951 8.8e-62 240.7 184 59.8
PGR042G2421 Punica granatum HOM05D007043 ORTHO05D008951 4.8e-60 235.0 153 75.2
MBI04_g42205_MAGBIO Magnolia biondii HOM05D007043 ORTHO05D008951 4.5e-58 228.4 258 49.6
Dinv41024 Davidia involucrata HOM05D007043 ORTHO05D008951 1.3e-57 226.9 134 78.4
Actinidia15616 Actinidia chinensis HOM05D007043 ORTHO05D008951 9.4e-56 220.7 153 69.9
Manes.18G095900 Manihot esculenta HOM05D007043 ORTHO05D008951 1.6e-55 219.9 153 71.9
Nitab4.5_0003443g0050 Nicotiana tabacum HOM05D007043 ORTHO05D008951 2.1e-55 219.5 153 71.2
Mapoly0053s0101 Marchantia polymorpha HOM05D007043 ORTHO05D008951 2.7e-55 219.2 182 58.8
TPR.G17053 Trifolium pratense HOM05D007043 ORTHO05D008951 2.7e-55 219.2 186 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3072 Anthoceros agrestis HOM05D007043 ORTHO05D008951 1.4e-54 216.9 178 60.1
Lsat_1_v5_gn_9_42421 Lactuca sativa HOM05D007043 ORTHO05D008951 1.4e-54 216.9 193 60.1
Nn5g28865 Nelumbo nucifera HOM05D007043 ORTHO05D008951 1.5e-53 213.4 153 69.3
FvH4_2g12860 Fragaria vesca HOM05D007043 ORTHO05D008951 1.7e-52 209.9 158 66.5
SMO011G0020 Selaginella moellendorffii HOM05D007043 ORTHO05D008951 1.4e-51 206.8 186 53.2
Lj7C386G15 Lonicera japonica HOM05D007043 ORTHO05D004353 2.6e-50 202.6 175 62.9
Sc26g0002900 Simmondsia chinensis HOM05D007043 ORTHO05D008951 4.5e-50 201.8 168 60.1
Zm00001eb282940 Zea mays HOM05D007043 ORTHO05D008951 7.7e-50 201.1 149 65.1
CANSAT25G3234 Cannabis sativa HOM05D007043 ORTHO05D008951 1.7e-49 199.9 153 66.7
Pp3c20_5410 Physcomitrium patens HOM05D007043 ORTHO05D008951 3.7e-44 182.2 138 63.0
CBR_g38956 Chara braunii HOM05D007043 ORTHO05D008951 1.1e-43 180.6 190 52.6
Cre08.g358900 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 8.8e-38 161.0 189 45.5
Cre17.g708100 Chlamydomonas reinhardtii HOM05D007043 ORTHO05D008951 1.3e-36 157.1 188 46.3
Actinidia17764 Actinidia chinensis HOM05D007043 ORTHO05D008951 2.0e-34 149.8 126 62.7
MCO13G296 Micromonas commoda HOM05D007043 ORTHO05D008951 7.2e-32 141.4 182 44.0
TPR.G793 Trifolium pratense HOM05D007043 ORTHO05D008951 5.7e-29 131.7 72 84.7
PRCOL_00003632 Prasinoderma coloniale HOM05D007043 ORTHO05D008951 7.5e-29 131.3 182 40.1
SGA_v2.0_scaffold364G49968 Striga asiatica HOM05D007043 ORTHO05D008951 8.3e-28 127.9 180 43.9
Sabra05G0151000 Salix brachista HOM05D000032 ORTHO05D004353 4.5e-18 95.5 56 78.6


User provided reference genes

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