Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 8.1e-109 397.1 205 100.0
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.6e-88 329.7 208 88.0
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 5.1e-87 324.7 208 86.5
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 5.5e-73 278.1 205 75.6
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 8.4e-66 254.2 203 72.9
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.2e-58 229.6 220 66.4
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-57 227.3 207 64.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 2.7e-56 222.6 212 66.5
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 5.7e-54 214.9 211 62.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 9.7e-54 214.2 221 62.0
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-52 210.7 205 61.5
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-51 207.2 205 59.5
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.9e-50 202.6 209 57.9
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 2.9e-50 202.6 193 64.8
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 6.5e-50 201.4 201 58.2
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.7e-48 196.1 210 53.3
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.1e-46 190.7 203 57.1
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 9.7e-46 187.6 212 59.4
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.8e-45 186.0 203 59.1
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.8e-45 185.3 202 53.5
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.6e-43 179.5 201 54.7
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 3.4e-43 179.1 204 54.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.0e-42 177.6 199 54.3
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 5.0e-42 175.3 209 53.1
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.5e-42 174.9 165 60.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.2e-41 172.2 165 60.0
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.1e-40 169.9 199 53.8
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 3.6e-40 169.1 203 52.2
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.8e-36 156.8 177 53.7
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.3e-36 155.2 191 51.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.0e-35 153.3 211 48.8
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 7.7e-35 151.4 212 51.4
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.7e-34 150.2 168 55.4
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 3.8e-34 149.1 190 47.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 5.0e-34 148.7 191 47.6
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.1e-33 147.5 197 48.7
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.1e-33 147.5 174 49.4
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.5e-33 147.1 191 49.7
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.5e-33 147.1 191 49.7
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 4.2e-33 145.6 162 54.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 7.2e-33 144.8 187 48.7
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.4e-33 144.4 177 52.5
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.6e-32 143.7 177 52.5
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 2.7e-32 142.9 196 46.9
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 3.6e-32 142.5 234 42.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.0e-31 141.0 198 44.9
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.8e-31 140.2 206 47.6
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 3.0e-31 139.4 196 45.9
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 4.0e-31 139.0 180 49.4
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 8.8e-31 137.9 161 49.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.5e-30 137.1 183 46.4
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.6e-30 136.3 198 47.5
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.6e-30 136.3 207 44.4
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 7.5e-30 134.8 166 51.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 7.5e-30 134.8 156 50.6
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 7.5e-30 134.8 214 49.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.3e-29 134.0 192 47.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.7e-29 133.7 179 51.4
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.7e-29 133.7 174 46.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 6.3e-29 131.7 157 51.0
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 8.2e-29 131.3 219 41.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 8.2e-29 131.3 169 47.9
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 8.2e-29 131.3 166 51.8
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-28 130.2 224 42.4
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.1e-28 129.4 180 47.2
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 4.1e-28 129.0 194 45.9
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.1e-28 129.0 169 45.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-27 127.1 216 40.7
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.6e-27 127.1 169 49.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 4.5e-27 125.6 208 41.3
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 5.9e-27 125.2 216 40.3
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 7.7e-27 124.8 152 50.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.7e-26 123.6 176 50.0
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.7e-26 123.6 189 43.9
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.9e-26 122.9 159 48.4
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 5.0e-26 122.1 175 46.9
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.5e-26 121.7 200 44.0
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 6.5e-26 121.7 168 49.4
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.5e-26 121.7 191 42.4
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.1e-25 120.9 192 42.7
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-25 120.6 200 42.5
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.5e-25 120.6 200 42.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.5e-25 120.6 178 45.5
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.5e-25 119.8 209 42.6
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.5e-25 119.8 168 44.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 5.5e-25 118.6 226 42.5
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 9.4e-25 117.9 142 50.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.2e-24 117.5 205 42.0
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.2e-24 117.5 194 40.2
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-24 116.3 203 42.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.7e-24 116.3 216 41.7
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 3.6e-24 115.9 218 41.7
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 4.7e-24 115.5 210 41.0
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 6.1e-24 115.2 201 43.3
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 6.1e-24 115.2 201 43.3
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 6.1e-24 115.2 201 43.3
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 6.1e-24 115.2 142 49.3
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.0e-23 114.4 178 43.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.8e-23 113.6 219 40.2
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.8e-23 113.6 168 48.8
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.8e-23 113.6 147 47.6
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.8e-23 113.6 166 42.8
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.3e-23 113.2 203 41.4
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.0e-23 112.8 229 39.3
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 4.0e-23 112.5 203 41.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.2e-23 112.1 204 40.2
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 5.2e-23 112.1 215 41.4
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 8.8e-23 111.3 203 40.9
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.6e-22 109.8 166 42.8
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.7e-22 108.6 189 40.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 5.7e-22 108.6 173 45.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 7.5e-22 108.2 191 44.0
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 9.8e-22 107.8 190 44.2
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.7e-21 107.1 149 45.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.2e-21 106.7 180 42.2
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 4.8e-21 105.5 205 38.5
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 8.3e-21 104.8 182 42.3
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 4.1e-20 102.4 194 41.2
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 5.4e-20 102.1 159 44.0
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 7.0e-20 101.7 177 42.9
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 7.0e-20 101.7 190 39.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.6e-19 100.5 166 45.2
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.5e-19 99.4 182 41.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.5e-19 99.0 171 42.1
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 5.9e-19 98.6 174 42.0
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.0e-18 97.8 184 40.2
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.3e-18 96.7 161 42.2
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.3e-18 96.7 171 41.5
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 5.0e-18 95.5 160 46.2
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.9e-17 93.6 134 46.3
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.2e-16 90.9 191 39.8
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.8e-16 89.7 151 40.4
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.0e-15 87.8 200 36.5
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.2e-14 84.3 119 51.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 9.8e-14 81.3 153 37.3
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.3e-13 80.9 192 35.9
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 4.9e-13 79.0 130 42.3
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.9e-13 79.0 130 41.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.8e-12 77.0 184 35.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 2.4e-12 76.6 155 40.6
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 3.3e-09 66.2 198 34.3
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 6.1e-08 62.0 152 32.2
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.0e-07 59.7 52 59.6
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 4.0e-07 59.3 147 32.0
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.4e-06 55.8 143 30.8
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.4e-06 55.8 85 45.9
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 7.5e-06 55.1 166 31.9


User provided reference genes

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