Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 2.0e-60 235.7 129 100.0
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 6.7e-53 210.7 127 91.3
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 2.8e-35 152.1 125 77.6
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.5e-31 139.8 128 68.8
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 4.2e-31 138.3 127 68.5
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 8.0e-30 134.0 130 67.7
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 2.0e-28 129.4 127 65.4
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 2.3e-24 115.9 128 61.7
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.6e-22 108.6 137 51.1
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 2.0e-20 102.8 149 52.3
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.4e-20 102.1 136 50.0
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 4.4e-20 101.7 141 49.6
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 3.7e-19 98.6 140 59.3
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 4.9e-19 98.2 128 56.2
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 5.4e-18 94.7 137 49.6
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.0e-18 94.4 141 52.5
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 9.2e-18 94.0 132 51.5
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.2e-17 93.6 153 45.8
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.6e-17 93.2 140 49.3
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.6e-17 93.2 132 49.2
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 2.0e-17 92.8 96 57.3
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 2.7e-17 92.4 130 48.5
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 2.7e-17 92.4 127 49.6
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 3.5e-17 92.0 131 48.9
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.6e-17 91.7 149 47.0
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.6e-17 91.7 120 50.8
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.9e-17 91.3 131 51.9
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.9e-17 91.3 131 51.9
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 5.9e-17 91.3 131 51.9
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 7.8e-17 90.9 126 49.2
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 2.3e-16 89.4 146 45.2
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 3.0e-16 89.0 141 51.8
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.0e-16 89.0 118 50.0
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 3.0e-16 89.0 143 47.6
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 3.9e-16 88.6 140 47.1
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 6.6e-16 87.8 118 50.0
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 6.6e-16 87.8 139 48.9
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.1e-15 87.0 134 46.3
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.5e-15 86.7 138 47.1
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 4.3e-15 85.1 85 57.6
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 5.6e-15 84.7 134 47.0
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 1.6e-14 83.2 120 50.0
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.6e-14 83.2 130 47.7
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.4e-13 80.1 127 45.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.8e-13 79.7 140 45.0
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 3.1e-13 79.0 130 43.8
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 4.0e-13 78.6 131 47.3
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.2e-13 78.2 127 44.9
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 6.8e-13 77.8 82 59.8
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 1.5e-12 76.6 137 46.7
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 1.5e-12 76.6 136 41.9
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.0e-12 76.3 82 54.9
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 2.6e-12 75.9 131 47.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.3e-11 73.6 83 51.8
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.3e-11 73.6 122 46.7
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.7e-11 73.2 134 41.0
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 2.9e-11 72.4 127 42.5
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 3.7e-11 72.0 140 44.3
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 4.9e-11 71.6 96 49.0
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 1.1e-10 70.5 112 44.6
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 1.4e-10 70.1 80 50.0
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.4e-10 70.1 129 44.2
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.4e-10 70.1 121 44.6
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.4e-10 70.1 125 42.4
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 3.2e-10 68.9 78 55.1
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 4.1e-10 68.6 73 52.1
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 4.1e-10 68.6 91 51.6
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 7.0e-10 67.8 104 44.2
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 7.0e-10 67.8 94 50.0
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 9.2e-10 67.4 96 47.9
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 9.2e-10 67.4 72 48.6
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 1.2e-09 67.0 127 39.4
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 1.2e-09 67.0 94 50.0
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 1.6e-09 66.6 94 48.9
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 2.0e-09 66.2 80 48.8
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 2.7e-09 65.9 79 53.2
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 2.7e-09 65.9 81 50.6
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 3.5e-09 65.5 53 67.9
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 4.6e-09 65.1 79 43.0
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 7.8e-09 64.3 94 47.9
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.0e-08 63.9 94 47.9
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 1.0e-08 63.9 94 47.9
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 1.0e-08 63.9 85 43.5
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 1.3e-08 63.5 107 44.9
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 1.3e-08 63.5 107 44.9
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 1.3e-08 63.5 107 44.9
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.3e-08 63.5 80 50.0
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.3e-08 63.5 126 41.3
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.3e-08 63.5 58 55.2
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 1.7e-08 63.2 106 46.2
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 1.7e-08 63.2 60 58.3
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.3e-08 62.8 91 49.5
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.3e-08 62.8 91 49.5
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.3e-08 62.8 64 51.6
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 3.0e-08 62.4 111 45.0
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 3.0e-08 62.4 91 48.4
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 3.0e-08 62.4 94 46.8
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 3.0e-08 62.4 131 40.5
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 3.0e-08 62.4 53 62.3
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 3.9e-08 62.0 93 39.8
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 6.6e-08 61.2 127 41.7
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 8.6e-08 60.8 82 47.6
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.1e-07 60.5 91 47.3
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 1.1e-07 60.5 132 39.4
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 3.3e-07 58.9 80 50.0
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 3.3e-07 58.9 99 43.4
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 3.3e-07 58.9 99 43.4
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 5.6e-07 58.2 118 33.1
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 7.3e-07 57.8 136 37.5
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 1.6e-06 56.6 48 50.0
Sed0010162 Sechium edule HOM05D024969 ORTHO05D025069 1.6e-06 56.6 98 42.9
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 2.8e-06 55.8 83 42.2
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 2.8e-06 55.8 101 40.6
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 3.6e-06 55.5 86 41.9
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 6.2e-06 54.7 64 48.4
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 8.1e-06 54.3 133 33.1
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 8.1e-06 54.3 76 46.1


User provided reference genes

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