Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G214300 Glycine max HOM05D001459 ORTHO05D001359 4.4e-37 157.5 84 100.0
Glyma.01G177400 Glycine max HOM05D001459 ORTHO05D001359 1.1e-22 109.8 59 93.2
Glyma.11G065000 Glycine max HOM05D001459 ORTHO05D001359 1.5e-16 89.4 59 79.7
VMungo0251G2841 Vigna mungo HOM05D001459 ORTHO05D001359 3.1e-14 81.6 55 74.5
Medtr8g077950 Medicago truncatula HOM05D001459 ORTHO05D001359 2.6e-13 78.6 55 70.9
Phvul.003G252000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 2.6e-13 78.6 59 67.8
Ca_26385_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 7.6e-13 77.0 59 66.1
Glyma.16G141500 Glycine max HOM05D001459 ORTHO05D001359 7.6e-13 77.0 59 66.1
Glyma.02G058800 Glycine max HOM05D001459 ORTHO05D001359 3.8e-12 74.7 59 64.4
Lalb_Chr05g0227641 Lupinus albus HOM05D001459 ORTHO05D001359 8.4e-12 73.6 59 61.0
TPR.G20292 Trifolium pratense HOM05D001459 ORTHO05D001359 1.1e-11 73.2 55 65.5
Psat4g091720 Pisum sativum HOM05D001459 ORTHO05D001359 1.9e-11 72.4 55 65.5
TPR.G12972 Trifolium pratense HOM05D001459 ORTHO05D001359 3.2e-11 71.6 55 63.6
Lj2g0001412 Lotus japonicus HOM05D001459 ORTHO05D001359 1.6e-10 69.3 63 58.7
QL06p045359 Quercus lobata HOM05D001459 ORTHO05D001359 1.6e-10 69.3 59 57.6
Hund16578 Selenicereus undatus HOM05D001459 ORTHO05D001359 1.6e-10 69.3 59 57.6
CANSAT01G1094 Cannabis sativa HOM05D001459 ORTHO05D001359 1.0e-09 66.6 58 58.6
Hma1.2p1_0652F.1_g195860 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 1.0e-09 66.6 59 55.9
Hma1.2p1_3707F.1_g337320 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 1.0e-09 66.6 59 55.9
CSS0014466 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 2.3e-09 65.5 56 58.9
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 2.3e-09 65.5 58 60.3
CiPaw.01G034500 Carya illinoinensis HOM05D001459 ORTHO05D001359 3.0e-09 65.1 58 56.9
CiPaw.02G015400 Carya illinoinensis HOM05D001459 ORTHO05D001359 3.0e-09 65.1 59 55.9
MD15G1266700 Malus domestica HOM05D001459 ORTHO05D001359 3.0e-09 65.1 59 61.0
FAN23G1882 Fragaria x ananassa HOM05D001459 ORTHO05D001359 3.9e-09 64.7 55 60.0
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 3.9e-09 64.7 59 59.3
arahy.Tifrunner.gnm1.ann1.AVA03Z Arachis hypogaea HOM05D001459 ORTHO05D001359 5.1e-09 64.3 59 57.6
Ah.03g139290 Amaranthus hybridus HOM05D001459 ORTHO05D001359 6.6e-09 63.9 55 56.4
SGA_v2.0_scaffold33G13393 Striga asiatica HOM05D001459 ORTHO05D001359 6.6e-09 63.9 49 63.3
Cc07_g09170 Coffea canephora HOM05D001459 ORTHO05D001359 8.7e-09 63.5 58 55.2
Manes.13G136900 Manihot esculenta HOM05D001459 ORTHO05D001359 1.1e-08 63.2 60 60.0
RcHm_v2.0_Chr2g0102191 Rosa chinensis HOM05D001459 ORTHO05D001359 1.1e-08 63.2 55 60.0
arahy.Tifrunner.gnm1.ann1.J541GW Arachis hypogaea HOM05D001459 ORTHO05D001359 1.9e-08 62.4 59 57.6
FAN19G1027 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.9e-08 62.4 50 64.0
Lj4C197T2 Lonicera japonica HOM05D001459 ORTHO05D001359 1.9e-08 62.4 63 50.8
Ciclev10025963m.g Citrus clementina HOM05D001459 ORTHO05D001359 2.5e-08 62.0 55 61.8
Migut.H00187 Erythranthe guttata HOM05D001459 ORTHO05D001359 2.5e-08 62.0 70 51.4
Sed0015500 Sechium edule HOM05D001459 ORTHO05D001359 2.5e-08 62.0 59 54.2
Actinidia36544 Actinidia chinensis HOM05D001459 ORTHO05D001359 3.3e-08 61.6 52 57.7
Cpa.g.sc158.7 Carica papaya HOM05D001459 ORTHO05D001359 3.3e-08 61.6 55 63.6
ClCG01G019360 Citrullus lanatus HOM05D001459 ORTHO05D001359 3.3e-08 61.6 59 54.2
RcHm_v2.0_Chr6g0312351 Rosa chinensis HOM05D002050 ORTHO05D001949 3.3e-08 61.6 55 58.2
GSVIVG01019009001 Vitis vinifera HOM05D001459 ORTHO05D001359 3.3e-08 61.6 58 56.9
MELO3C007811.2 Cucumis melo HOM05D001459 ORTHO05D001359 5.6e-08 60.8 59 52.5
Oeu037894.1 Olea europaea HOM05D001459 ORTHO05D001359 5.6e-08 60.8 55 56.4
CsaV3_6G046080 Cucumis sativus L. HOM05D001459 ORTHO05D001359 7.3e-08 60.5 59 52.5
Peaxi162Scf00427g00516 Petunia axillaris HOM05D001459 ORTHO05D001359 7.3e-08 60.5 73 47.9
MSTRG.15280 Avicennia marina HOM05D001459 ORTHO05D001359 1.6e-07 59.3 61 57.4
AUR62003183 Chenopodium quinoa HOM05D001459 ORTHO05D001359 1.6e-07 59.3 60 58.3
AUR62008004 Chenopodium quinoa HOM05D001459 ORTHO05D001359 1.6e-07 59.3 60 58.3
FvH4_1g13880 Fragaria vesca HOM05D001459 ORTHO05D001359 1.6e-07 59.3 48 62.5
FAN26G2630 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.6e-07 59.3 48 62.5
FAN28G1442 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.6e-07 59.3 48 62.5
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 1.6e-07 59.3 63 55.6
Sc03g0000900 Simmondsia chinensis HOM05D001459 ORTHO05D001359 2.1e-07 58.9 57 52.6
Actinidia12110 Actinidia chinensis HOM05D001459 ORTHO05D001359 2.8e-07 58.5 69 46.4
Haze_15122 Corylus avellana HOM05D001459 ORTHO05D001359 2.8e-07 58.5 56 58.9
EL10Ac6g14910 Beta vulgaris HOM05D001459 ORTHO05D001359 3.6e-07 58.2 61 49.2
Cfa004278 Carpinus fangiana HOM05D000088 ORTHO05D001217 3.6e-07 58.2 56 58.9
Prupe.7G150700 Prunus persica HOM05D001459 ORTHO05D001359 3.6e-07 58.2 59 54.2
Duzib147G1182 Durio zibethinus HOM05D001459 ORTHO05D001359 4.7e-07 57.8 57 57.9
Sabra07G0025300 Salix brachista HOM05D001459 ORTHO05D001359 4.7e-07 57.8 59 54.2
CAN.G358.125 Capsicum annuum HOM05D001459 ORTHO05D001359 6.2e-07 57.4 73 45.2
ECA246G3405 Erigeron canadensis HOM05D001788 ORTHO05D006995 8.1e-07 57.0 49 61.2
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 8.1e-07 57.0 55 56.4
Potri.007G029400 Populus trichocarpa HOM05D001459 ORTHO05D001359 8.1e-07 57.0 59 52.5
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 1.1e-06 56.6 64 50.0
Solyc02g085610.4 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.8e-06 55.8 73 46.6
Sopen02g030280 Solanum pennellii HOM05D001459 ORTHO05D001359 1.8e-06 55.8 73 46.6
COL.COLO4_22118 Corchorus olitorius HOM05D001459 ORTHO05D001359 2.4e-06 55.5 54 59.3
Thecc.01G039900 Theobroma cacao HOM05D001459 ORTHO05D001359 3.1e-06 55.1 57 56.1
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 5.2e-06 54.3 73 45.2
TAR625G0297 Trochodendron aralioides HOM05D001459 ORTHO05D001359 5.2e-06 54.3 63 49.2
Duzib264G0166 Durio zibethinus HOM05D001459 ORTHO05D001359 6.9e-06 53.9 57 54.4
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 6.9e-06 53.9 55 61.8
DCAR_025934 Daucus carota HOM05D001459 ORTHO05D001359 9.0e-06 53.5 61 52.5


User provided reference genes

Program Settings