Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.7e-105 386.0 188 100.0
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 7.9e-87 323.9 182 85.2
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-84 315.5 182 80.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.4e-83 312.4 182 80.8
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.0e-82 309.3 182 79.1
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-81 306.6 180 79.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.7e-81 306.2 188 76.6
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.2e-81 305.8 181 80.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.5e-80 303.1 182 78.6
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.7e-79 298.9 184 77.7
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 3.0e-78 295.4 188 74.5
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.4e-77 291.6 184 74.5
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 9.7e-77 290.4 184 74.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 9.7e-77 290.4 184 73.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.1e-75 285.0 183 77.0
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.3e-75 284.6 181 73.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 9.1e-75 283.9 181 73.5
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.0e-74 282.7 185 71.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.7e-74 282.3 183 72.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 5.9e-74 281.2 184 72.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.0e-73 280.4 185 73.0
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.7e-73 279.6 180 73.3
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.1e-72 276.9 176 75.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 5.5e-72 274.6 181 70.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 7.2e-72 274.2 185 70.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.6e-71 273.1 190 71.1
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 8.0e-71 270.8 184 70.1
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 8.0e-71 270.8 182 69.2
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 8.0e-71 270.8 178 71.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.0e-70 270.4 181 70.2
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.0e-70 270.4 186 71.0
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-70 270.4 186 71.0
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.0e-70 270.4 181 71.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.8e-70 269.6 181 70.2
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.8e-70 267.7 182 69.8
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.2e-69 266.9 184 68.5
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-69 266.5 181 70.2
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.6e-69 265.8 184 67.9
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.4e-69 265.4 186 67.2
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.4e-69 265.4 181 70.2
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.4e-69 265.4 186 69.4
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.4e-69 265.0 186 69.4
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.4e-69 265.0 183 67.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.7e-69 264.6 199 63.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.7e-69 264.6 181 69.6
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.7e-69 264.6 186 68.3
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 7.5e-69 264.2 181 66.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.5e-69 264.2 182 71.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.8e-69 263.8 181 69.6
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.3e-68 263.5 183 69.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.2e-68 262.7 183 67.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 4.8e-68 261.5 184 70.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.3e-68 260.8 186 68.3
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.1e-67 260.4 183 66.7
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.4e-67 260.0 183 69.9
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.8e-67 259.6 181 68.0
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 3.1e-67 258.8 183 68.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 4.1e-67 258.5 185 68.6
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 7.0e-67 257.7 186 66.7
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.6e-66 256.5 181 66.9
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.6e-66 256.5 185 68.1
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.0e-66 256.1 180 67.2
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.0e-66 256.1 181 69.1
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 3.5e-66 255.4 158 76.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 5.9e-66 254.6 186 66.1
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 7.7e-66 254.2 192 61.5
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.3e-65 252.7 181 68.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 5.0e-65 251.5 181 67.4
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.6e-65 250.8 184 67.9
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.2e-64 248.8 175 70.9
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 5.5e-64 248.1 179 65.9
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 7.2e-64 247.7 180 65.0
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.5e-64 247.3 196 61.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.1e-63 246.1 177 67.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.8e-63 245.7 180 63.9
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.8e-63 245.7 180 61.1
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 3.6e-63 245.4 178 60.7
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.0e-62 243.8 186 64.5
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.4e-62 243.4 158 72.8
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.3e-62 242.7 179 63.1
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.3e-62 242.7 179 63.1
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.3e-62 242.7 161 72.0
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.2e-62 241.5 181 63.0
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 5.2e-62 241.5 199 59.3
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 1.2e-61 240.4 180 65.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.2e-61 240.4 178 64.6
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.4e-61 238.8 180 62.2
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.4e-61 238.8 180 62.2
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.7e-61 238.0 181 64.6
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.8e-60 235.7 181 60.8
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.7e-60 235.3 173 64.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.4e-59 233.4 176 61.4
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.8e-59 233.0 180 60.6
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.1e-59 232.3 177 63.8
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.4e-59 231.5 165 66.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.6e-58 229.9 175 62.3
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.5e-58 228.8 166 65.7
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.8e-57 225.3 180 55.6
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.9e-56 223.0 181 57.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.6e-55 219.9 159 63.5
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.1e-55 218.0 184 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.0e-54 217.2 185 57.3
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.0e-54 217.2 182 55.5
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.4e-54 216.9 131 77.1
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 8.9e-54 214.2 131 77.9
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.2e-53 213.8 169 63.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.5e-53 213.4 181 56.9
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.4e-53 212.2 165 64.2
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.3e-52 210.3 149 66.4
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.1e-51 207.2 133 71.4
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.0e-50 203.0 137 72.3
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.0e-49 199.1 159 59.7
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.5e-48 196.8 191 52.4
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.3e-48 195.7 166 60.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 6.8e-46 188.0 196 49.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.5e-45 184.5 139 64.7
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-44 181.4 169 50.9
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-43 180.3 167 51.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-43 179.5 169 50.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-42 177.2 162 51.9
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-41 174.1 182 52.7
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 6.6e-41 171.4 109 72.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-39 167.2 161 49.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.3e-36 157.1 182 44.5
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.2e-36 156.4 188 45.7
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-36 155.2 139 51.8
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-34 150.2 128 54.7
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.6e-34 148.7 114 60.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-33 146.0 169 45.0
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 5.1e-33 145.2 181 40.9
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 8.1e-31 137.9 90 70.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.8e-29 131.7 88 69.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 4.3e-24 115.5 194 35.6
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-19 99.4 87 50.6
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.7e-17 93.6 110 46.4
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.9e-12 76.3 50 72.0
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-11 74.3 46 73.9
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 9.3e-11 71.2 44 77.3
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.6e-10 68.9 56 60.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 6.0e-10 68.6 45 66.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.1e-08 64.3 108 33.3
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-08 64.3 53 54.7


User provided reference genes

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