Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.1e-103 379.0 186 100.0
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 9.0e-91 337.0 186 87.1
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 9.0e-91 337.0 186 85.5
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 7.6e-90 334.0 186 85.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.3e-86 322.4 182 85.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.7e-86 320.9 186 82.3
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-85 320.1 180 84.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.8e-84 314.7 186 79.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.0e-82 309.3 186 79.6
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 7.6e-82 307.4 186 81.2
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 9.9e-82 307.0 187 79.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 9.3e-80 300.4 185 75.7
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.5e-77 292.4 181 75.1
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 3.3e-77 292.0 183 75.4
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.6e-77 291.2 181 74.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.8e-76 288.9 181 74.0
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.4e-75 286.6 186 71.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.8e-75 286.2 181 72.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.4e-75 285.8 186 74.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.3e-75 284.6 181 71.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.2e-74 283.5 180 73.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.5e-74 281.6 181 71.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.6e-74 280.8 184 72.3
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.0e-73 280.4 186 70.4
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.3e-73 280.0 183 71.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.7e-73 279.6 184 70.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.8e-73 278.5 168 77.4
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.8e-73 278.5 185 71.4
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 8.4e-73 277.3 181 71.8
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 8.4e-73 277.3 182 72.0
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.4e-73 277.3 182 72.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.1e-72 276.9 183 69.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.5e-72 275.8 180 72.2
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.5e-72 275.8 181 71.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.5e-72 275.8 186 69.4
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 4.2e-72 275.0 181 71.8
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.5e-72 274.6 181 74.0
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.3e-72 273.9 182 71.4
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 9.3e-72 273.9 178 71.3
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.6e-71 273.1 183 72.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.6e-71 273.1 182 70.9
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.6e-71 273.1 180 72.2
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-71 272.7 182 72.5
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.9e-71 270.8 182 70.9
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 7.9e-71 270.8 188 68.6
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.8e-70 269.6 185 71.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.8e-70 269.6 186 68.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 6.7e-70 267.7 181 69.1
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 8.7e-70 267.3 181 69.6
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-69 266.5 184 67.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.9e-69 266.2 180 68.9
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 3.3e-69 265.4 194 66.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.3e-68 263.5 183 67.2
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.3e-68 261.2 181 68.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 6.3e-68 261.2 181 68.5
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 8.2e-68 260.8 180 67.8
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.1e-67 260.4 160 78.1
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.8e-67 259.6 181 68.5
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.4e-67 259.2 192 62.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 5.3e-67 258.1 182 65.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 6.9e-67 257.7 194 66.0
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 6.9e-67 257.7 181 67.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.0e-66 256.1 179 65.4
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.4e-66 255.4 182 65.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.3e-65 253.4 178 67.4
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.9e-65 252.3 181 68.0
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.8e-65 251.9 181 64.6
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 5.0e-65 251.5 181 65.2
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 5.0e-65 251.5 180 67.2
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.1e-64 250.4 181 65.7
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.1e-64 250.4 182 60.4
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.5e-64 249.2 181 64.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.2e-64 248.4 175 66.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.2e-64 248.4 199 61.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 9.4e-64 247.3 164 72.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.7e-63 245.7 160 72.5
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.6e-63 245.4 181 64.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.6e-63 245.0 187 63.6
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 6.1e-63 244.6 180 63.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.3e-62 242.7 159 73.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.1e-62 241.5 179 67.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 8.8e-62 240.7 175 64.0
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.1e-61 240.4 180 62.8
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.3e-61 238.4 179 60.9
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.3e-61 238.4 179 60.9
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.7e-61 238.0 180 63.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 9.7e-61 237.3 180 58.9
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.2e-60 236.1 180 62.2
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.2e-60 236.1 180 62.2
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.8e-60 235.7 179 62.0
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.8e-60 235.7 181 60.2
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 4.8e-60 235.0 186 58.1
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.1e-59 233.8 184 58.2
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.1e-59 231.9 178 61.2
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.3e-59 231.5 175 62.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.3e-59 231.5 163 65.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.5e-58 229.9 179 59.8
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.6e-58 229.2 175 59.4
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 7.7e-58 227.6 165 65.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-56 223.8 133 79.7
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.5e-56 222.6 151 70.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.2e-56 222.2 175 60.6
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.2e-56 221.9 160 62.5
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 5.5e-56 221.5 179 55.9
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.0e-54 217.2 137 75.9
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.7e-54 214.5 161 65.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 3.3e-53 212.2 133 73.7
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 9.7e-53 210.7 181 58.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.2e-52 209.5 133 71.4
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 6.3e-52 208.0 181 54.1
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.4e-51 206.8 160 64.4
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 7.7e-50 201.1 162 59.9
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-49 200.7 143 69.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.1e-48 197.2 166 62.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-48 196.8 186 58.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 6.1e-47 191.4 181 50.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-45 186.0 169 51.5
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.4e-45 184.5 168 51.8
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-44 183.0 169 50.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-44 182.6 162 53.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 8.2e-44 181.0 190 50.0
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.6e-42 176.8 112 70.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-39 166.0 161 49.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-36 156.0 139 51.1
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.8e-36 155.2 181 45.3
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-35 154.1 128 55.5
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.8e-35 153.3 114 60.5
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.4e-35 152.9 181 43.1
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 9.1e-35 151.0 181 41.4
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.7e-34 147.9 169 44.4
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.9e-32 143.3 90 72.2
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.4e-29 132.1 75 77.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.8e-23 112.8 197 35.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.3e-20 101.3 94 47.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-17 94.0 117 44.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.5e-13 80.5 49 77.6
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.6e-13 79.7 49 77.6
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 9.2e-11 71.2 49 69.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.8e-10 68.2 49 61.2
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 5.0e-09 65.5 45 66.7
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.6e-09 65.1 53 54.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 7.3e-08 61.6 108 33.3


User provided reference genes

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