Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 2.2e-105 385.6 188 100.0
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 6.9e-91 337.4 204 84.3
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 5.2e-78 294.7 202 76.2
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.2e-77 293.5 203 76.4
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 8.8e-70 267.3 209 67.0
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.4e-67 259.2 211 66.8
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 5.9e-66 254.6 213 68.1
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 7.7e-66 254.2 201 70.6
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 3.6e-63 245.4 188 69.1
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 6.1e-63 244.6 210 62.9
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 8.0e-63 244.2 207 66.7
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.8e-62 243.0 152 80.9
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 5.2e-62 241.5 170 71.2
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 4.4e-61 238.4 201 62.7
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 4.9e-60 235.0 187 66.8
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 6.3e-60 234.6 204 62.7
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.6e-58 229.9 207 59.9
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 2.0e-58 229.6 209 60.3
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 3.5e-58 228.8 174 66.7
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 4.5e-58 228.4 210 59.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 4.5e-58 228.4 207 59.4
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.3e-57 226.9 202 61.9
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 2.3e-57 226.1 207 58.9
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 2.9e-57 225.7 209 61.2
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 8.6e-57 224.2 199 59.8
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.5e-56 223.4 174 66.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.9e-56 223.0 152 69.7
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.9e-56 223.0 169 65.7
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 2.1e-55 219.5 206 56.8
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.1e-55 219.5 186 61.3
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.8e-55 219.2 186 60.8
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 2.8e-55 219.2 168 65.5
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 3.6e-55 218.8 182 63.2
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 4.7e-55 218.4 168 65.5
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.3e-54 216.1 199 58.8
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.3e-54 216.1 199 58.8
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 4.0e-54 215.3 208 56.7
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.2e-54 214.9 199 58.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.2e-53 213.8 164 66.5
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 1.5e-53 213.4 174 63.2
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 3.4e-53 212.2 150 71.3
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.4e-53 211.8 170 57.6
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 4.4e-53 211.8 188 59.6
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.4e-53 211.8 199 57.8
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.3e-52 210.3 153 69.3
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.3e-52 210.3 199 57.3
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.3e-52 210.3 181 60.8
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.7e-52 209.9 175 60.6
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 8.3e-52 207.6 197 57.4
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 1.1e-51 207.2 171 64.3
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.1e-51 205.3 146 67.8
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 9.2e-51 204.1 162 61.1
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 1.6e-50 203.4 150 64.0
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 2.0e-50 203.0 183 57.4
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.7e-50 202.6 210 56.2
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 3.5e-50 202.2 184 57.6
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.5e-50 202.2 146 67.1
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 7.8e-50 201.1 150 63.3
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 7.8e-50 201.1 153 61.4
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 7.8e-50 201.1 153 61.4
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.0e-49 200.7 189 58.7
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.3e-49 200.3 203 55.2
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 2.3e-49 199.5 153 60.8
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.3e-49 199.5 183 56.8
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.3e-49 199.5 148 65.5
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.0e-49 199.1 148 65.5
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 5.0e-49 198.4 143 67.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 6.6e-49 198.0 153 60.8
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 6.6e-49 198.0 147 66.0
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 6.6e-49 198.0 148 62.2
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 8.6e-49 197.6 167 58.7
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.1e-48 197.2 165 58.2
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 2.5e-48 196.1 149 61.7
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 7.3e-48 194.5 150 62.0
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 9.5e-48 194.1 155 63.9
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.2e-47 193.7 148 64.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.2e-47 193.7 152 61.8
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 3.6e-47 192.2 148 65.5
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 5.2e-46 188.3 149 64.4
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.1e-43 180.6 176 56.2
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 2.4e-43 179.5 214 50.5
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 9.2e-43 177.6 132 68.2
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 7.8e-42 174.5 215 47.9
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 8.6e-41 171.0 144 62.5
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 8.6e-41 171.0 136 64.7
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 3.3e-40 169.1 152 54.6
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 9.5e-40 167.5 128 64.1
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 3.6e-39 165.6 208 48.1
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.4e-35 152.9 148 48.6
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.4e-35 152.9 148 48.6
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 9.2e-35 151.0 142 57.0
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.6e-34 150.2 87 80.5
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 2.7e-34 149.4 148 48.6
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 6.0e-34 148.3 163 52.8
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.6e-31 140.2 172 48.8
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.3e-25 120.6 173 38.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 4.3e-24 115.5 153 39.2
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 7.3e-24 114.8 113 50.4
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 1.5e-21 107.1 141 45.4
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 7.6e-21 104.8 84 59.5
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.7e-18 96.3 161 42.2
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 4.3e-16 89.0 186 30.1
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.0e-14 82.4 165 35.8
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 4.2e-11 72.4 103 33.0
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.6e-10 70.5 149 32.2
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.1e-10 70.1 48 70.8
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.0e-09 66.2 42 59.5
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.5e-08 63.9 44 65.9
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 4.3e-08 62.4 32 87.5
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.6e-08 62.0 109 39.4
Lalb_Chr21g0313491 Lupinus albus HOM05D007188 ORTHO05D009102 3.7e-07 59.3 29 89.7
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 6.2e-07 58.5 39 69.2
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.1e-06 57.8 103 26.2


User provided reference genes

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