Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.6e-115 418.7 208 100.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.1e-65 253.8 162 80.9
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 6.6e-58 228.0 229 61.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 5.6e-57 224.9 229 60.3
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.1e-44 182.2 216 53.2
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.5e-43 179.1 212 53.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 9.5e-41 171.0 210 49.0
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.0e-39 165.6 206 49.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.2e-37 159.8 221 45.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 4.6e-35 152.1 232 46.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.6e-32 143.7 220 42.7
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 3.6e-32 142.5 203 46.8
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.8e-31 140.2 232 42.2
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.2e-28 129.0 221 39.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-27 127.1 214 44.4
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-27 126.3 179 42.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.8e-27 124.8 218 40.8
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.5e-25 119.8 221 38.5
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 9.6e-25 117.9 175 40.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.2e-24 117.5 203 40.4
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 4.7e-24 115.5 115 53.0
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.1e-23 114.4 216 44.4
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.9e-23 111.7 213 39.4
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 6.9e-23 111.7 208 35.1
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 9.0e-23 111.3 211 40.8
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 7.6e-22 108.2 191 37.7
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 7.6e-22 108.2 211 38.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.2e-21 106.7 215 37.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.8e-21 105.9 203 35.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.9e-21 105.5 211 39.3
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.4e-21 105.1 212 34.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.4e-21 104.8 202 36.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.4e-20 104.0 214 35.5
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.4e-20 103.2 219 33.3
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 3.2e-20 102.8 211 33.6
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 3.2e-20 102.8 210 35.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.2e-20 102.4 211 38.4
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 7.1e-20 101.7 180 37.8
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.6e-19 100.5 218 35.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.5e-19 99.4 209 32.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 4.6e-19 99.0 200 32.5
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 4.6e-19 99.0 214 36.4
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 7.8e-19 98.2 198 37.9
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 7.8e-19 98.2 217 35.5
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.7e-18 97.1 217 32.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-18 97.1 157 38.2
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.3e-18 96.7 175 38.9
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.3e-18 96.7 209 34.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.9e-18 95.9 215 36.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 8.7e-18 94.7 212 31.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.5e-17 94.0 119 49.6
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 2.5e-17 93.2 218 33.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 5.6e-17 92.0 227 33.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.3e-16 90.9 168 36.3
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.6e-16 90.5 252 34.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-16 89.7 179 30.7
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 6.2e-16 88.6 151 37.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.1e-16 88.2 186 32.3
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 8.1e-16 88.2 214 33.6
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.1e-15 87.8 213 32.9
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.1e-15 87.8 214 32.2
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-15 87.0 211 32.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.3e-15 85.5 174 35.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 5.3e-15 85.5 178 35.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 6.9e-15 85.1 213 32.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 9.0e-15 84.7 201 31.3
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-14 84.3 214 31.3
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-14 84.0 90 42.2
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-14 83.6 204 31.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.0e-14 83.6 173 32.9
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.4e-14 82.8 150 29.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.4e-14 82.8 191 31.9
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.4e-14 82.8 203 31.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.5e-14 82.4 188 32.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 7.6e-14 81.6 191 33.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.6e-14 81.6 207 33.3
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.3e-13 80.9 139 35.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.7e-13 80.5 154 35.7
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.7e-13 80.5 175 32.6
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 4.9e-13 79.0 198 29.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 6.4e-13 78.6 155 33.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 8.4e-13 78.2 119 39.5
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 5.4e-12 75.5 155 29.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 7.1e-12 75.1 221 29.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 7.1e-12 75.1 244 29.1
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 9.3e-12 74.7 177 28.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 9.3e-12 74.7 80 43.8
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.1e-11 73.6 146 35.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 2.1e-11 73.6 204 31.4
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-11 73.2 74 48.6
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 7.9e-11 71.6 115 36.5
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.0e-10 71.2 173 31.8
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.0e-10 69.7 136 33.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 5.1e-10 68.9 213 28.6
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 6.7e-10 68.6 111 37.8
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 6.7e-10 68.6 111 37.8
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 6.7e-10 68.6 204 28.4
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 6.7e-10 68.6 197 26.4
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.5e-09 67.4 212 31.1
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-09 67.4 212 31.1
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.9e-09 67.0 221 28.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.9e-09 67.0 195 32.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.3e-09 65.9 111 36.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.3e-09 65.9 219 28.8
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 4.3e-09 65.9 212 31.6
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 4.3e-09 65.9 219 28.8
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.3e-09 65.9 111 36.0
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 5.6e-09 65.5 213 28.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 5.6e-09 65.5 111 36.0
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 5.6e-09 65.5 144 36.8
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 5.6e-09 65.5 127 32.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 7.4e-09 65.1 151 29.8
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.3e-08 64.3 217 25.3
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-08 63.9 95 34.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.8e-08 63.2 188 32.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 3.7e-08 62.8 98 34.7
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.7e-08 62.8 181 27.1
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.8e-08 62.4 219 25.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 8.1e-08 61.6 198 28.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.1e-07 61.2 216 25.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-07 60.5 221 26.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.8e-07 60.5 120 29.2
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.4e-07 60.1 67 38.8
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.1e-07 59.7 143 28.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.1e-07 59.7 143 28.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.1e-07 59.7 204 26.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.0e-07 59.3 173 28.3
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.0e-07 59.3 216 27.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 4.0e-07 59.3 221 28.1
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 5.3e-07 58.9 233 27.0
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.9e-07 58.5 156 29.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.9e-07 58.5 220 27.7
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 9.0e-07 58.2 211 25.6
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.0e-07 58.2 158 32.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.0e-07 58.2 140 31.4
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.0e-06 57.0 67 37.3
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.6e-06 55.1 128 36.7
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 7.6e-06 55.1 54 46.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 9.9e-06 54.7 198 24.2


User provided reference genes

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