Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 0.0e+00 1305.0 677 100.0
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 0.0e+00 1079.7 678 85.7
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 6.5e-264 914.1 684 74.3
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.5e-247 859.0 610 75.9
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.8e-226 789.6 689 66.9
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.4e-221 773.5 685 64.5
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.3e-221 772.7 686 65.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 3.5e-209 732.3 742 59.6
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 8.9e-205 717.6 663 63.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 3.9e-152 542.7 686 52.6
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.5e-140 504.2 687 50.1
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 5.7e-119 432.6 664 45.2
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 7.5e-119 432.2 596 49.7
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.1e-113 414.1 680 41.9
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.2e-110 404.1 577 47.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.0e-108 397.5 735 41.0
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 7.2e-106 389.0 700 42.7
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.5e-103 381.3 583 45.1
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 3.4e-103 380.2 652 43.4
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 2.8e-102 377.1 690 40.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.1e-101 373.2 688 41.0
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 9.2e-101 372.1 696 40.1
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.5e-100 369.8 727 39.5
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 7.8e-100 369.0 593 44.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.3e-99 368.2 660 42.1
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.7e-99 367.9 689 39.6
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.7e-99 367.9 546 46.2
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.5e-98 364.8 645 41.7
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.9e-98 364.4 736 38.9
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.2e-97 361.7 726 39.1
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 2.1e-97 360.9 564 45.7
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.6e-97 360.1 547 47.0
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 8.0e-97 359.0 673 40.7
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 6.8e-96 355.9 682 40.3
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.3e-91 341.7 751 37.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 2.3e-91 340.9 756 37.3
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.1e-90 338.6 657 39.1
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.8e-88 331.3 715 36.8
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 5.2e-88 329.7 689 39.2
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.4e-86 322.8 683 37.2
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.4e-85 321.6 682 39.3
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 3.5e-84 317.0 697 38.2
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 4.3e-82 310.1 620 41.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 2.8e-81 307.4 670 37.3
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 2.6e-79 300.8 687 36.8
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.9e-78 296.6 678 38.3
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 4.9e-78 296.6 598 39.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.1e-77 295.4 685 36.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 6.0e-76 289.7 709 34.4
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 7.8e-76 289.3 825 32.2
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.1e-75 286.6 693 36.5
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.5e-71 275.0 544 39.3
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.6e-71 272.7 664 35.8
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-69 268.5 804 33.3
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.4e-69 268.5 655 36.0
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 2.3e-67 261.2 804 32.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.3e-67 261.2 622 36.0
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 6.6e-67 259.6 293 56.7
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.9e-66 258.1 740 34.7
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.9e-66 258.1 628 36.0
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.9e-66 258.1 640 36.9
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.3e-66 256.9 664 36.1
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.3e-65 255.4 675 32.9
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.6e-65 255.0 648 36.6
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 2.8e-65 254.2 628 34.7
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 4.8e-65 253.4 672 35.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 6.2e-65 253.1 668 35.9
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.4e-64 251.1 638 36.2
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 3.1e-64 250.8 509 41.3
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.0e-63 248.1 621 35.4
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 5.8e-63 246.5 479 41.1
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 9.9e-63 245.7 620 36.5
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.7e-62 245.0 642 35.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.2e-62 244.6 638 35.4
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.9e-62 243.4 754 31.6
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.1e-61 242.3 733 33.2
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 2.1e-60 238.0 635 34.0
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.6e-57 228.4 646 32.5
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.6e-57 228.4 639 34.7
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.8e-56 224.9 537 37.1
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.5e-55 221.9 656 31.7
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 4.5e-55 220.3 512 37.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 7.6e-55 219.5 642 34.7
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.1e-53 215.7 646 32.5
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.4e-53 214.5 521 37.4
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 7.1e-53 213.0 665 33.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 7.9e-52 209.5 521 36.9
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.3e-51 208.8 547 36.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.0e-51 207.6 531 33.3
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.9e-51 207.2 748 30.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 4.3e-50 203.8 499 37.7
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 8.1e-49 199.5 502 36.9
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 6.9e-48 196.4 504 36.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.7e-46 191.8 550 32.9
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.1e-45 189.1 577 33.4
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 3.5e-44 184.1 557 33.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.8e-43 181.8 566 32.5
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.9e-42 178.3 565 32.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.3e-41 175.6 531 31.6
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.3e-41 175.6 531 31.6
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 4.8e-41 173.7 585 30.9
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 4.8e-41 173.7 536 32.1
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 8.2e-41 172.9 536 33.6
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 2.6e-39 167.9 559 31.3
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.2e-38 164.9 557 32.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 2.2e-38 164.9 353 35.4
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 7.1e-37 159.8 519 30.8
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.2e-36 159.1 569 31.8
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.8e-35 155.2 662 29.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 8.7e-35 152.9 539 32.1
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.5e-34 152.1 551 31.9
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 4.3e-34 150.6 550 31.6
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 5.7e-34 150.2 550 31.6
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.6e-33 148.7 541 32.0
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 9.0e-32 142.9 389 31.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.0e-30 139.4 346 38.4
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.5e-30 136.7 654 26.6
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.0e-27 129.4 312 37.5
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.9e-27 127.5 296 42.6
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.1e-26 125.9 352 33.8
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 4.1e-24 117.5 571 28.4
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 9.1e-24 116.3 534 30.3
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 5.0e-22 110.5 208 41.3
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.1e-16 92.8 169 43.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 5.5e-13 80.5 364 29.4
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 4.5e-07 60.8 410 25.4
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 7.7e-07 60.1 339 28.0


User provided reference genes

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