Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 7.7e-188 660.6 402 100.0
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 1.1e-154 550.4 386 90.7
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 3.5e-100 369.4 397 65.0
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 5.6e-98 362.1 390 69.2
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 3.4e-95 352.8 377 66.6
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 9.3e-93 344.7 399 65.7
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 1.3e-91 340.9 407 60.0
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 1.1e-90 337.8 392 61.0
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 5.6e-90 335.5 404 64.1
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 3.7e-89 332.8 370 65.4
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 2.5e-77 293.5 398 58.3
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 4.8e-73 279.3 376 56.6
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 1.8e-72 277.3 373 55.8
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 3.1e-72 276.6 352 57.7
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 1.5e-71 274.2 377 56.0
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 2.0e-71 273.9 296 57.8
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 3.4e-71 273.1 351 60.1
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 4.5e-71 272.7 375 53.1
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 7.7e-71 271.9 324 60.5
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.3e-70 271.2 324 61.1
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 1.3e-70 271.2 369 55.0
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 1.2e-68 264.6 332 59.6
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 2.1e-68 263.8 360 59.4
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 4.6e-68 262.7 347 55.6
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 6.1e-68 262.3 396 56.3
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 7.9e-68 261.9 283 62.2
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 3.0e-67 260.0 387 52.2
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 3.9e-67 259.6 288 56.2
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 5.1e-67 259.2 352 57.1
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 6.7e-67 258.8 333 59.2
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.5e-66 257.7 324 57.1
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 2.6e-66 256.9 324 58.6
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 4.4e-66 256.1 331 55.3
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 9.7e-66 255.0 331 57.7
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 1.7e-65 254.2 232 68.5
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 2.2e-65 253.8 330 56.7
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 3.7e-65 253.1 359 54.0
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 1.4e-64 251.1 288 52.4
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.8e-64 250.8 329 57.8
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 9.1e-64 248.4 297 53.5
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 9.1e-64 248.4 390 51.5
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 2.0e-63 247.3 369 54.2
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 2.0e-63 247.3 477 45.5
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 2.6e-63 246.9 293 53.2
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 1.7e-62 244.2 264 57.6
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 2.2e-62 243.8 323 56.3
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 8.5e-62 241.9 265 52.1
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 4.2e-61 239.6 263 55.1
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 7.2e-61 238.8 323 53.9
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 7.2e-61 238.8 261 55.6
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 9.4e-61 238.4 345 57.7
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 1.2e-60 238.0 286 51.7
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 1.6e-60 237.7 263 54.8
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 4.7e-60 236.1 345 57.7
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 4.7e-60 236.1 272 51.1
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 6.1e-60 235.7 346 52.3
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 3.9e-59 233.0 281 51.6
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 6.7e-59 232.3 292 54.8
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 6.7e-59 232.3 388 52.6
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 6.7e-59 232.3 346 57.2
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 8.8e-59 231.9 386 49.7
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 1.1e-58 231.5 324 54.6
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 7.4e-58 228.8 370 51.1
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 7.4e-58 228.8 364 53.3
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 9.7e-58 228.4 369 50.1
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 9.7e-58 228.4 385 49.9
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 3.7e-57 226.5 336 52.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-56 224.2 281 50.9
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 4.5e-55 219.5 354 55.9
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.0e-54 218.4 372 47.8
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 6.5e-54 215.7 239 55.6
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 1.5e-53 214.5 334 50.3
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 1.9e-53 214.2 216 57.9
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 2.5e-53 213.8 380 47.6
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 3.2e-53 213.4 380 49.7
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 4.2e-53 213.0 205 65.9
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 4.2e-53 213.0 363 53.2
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 5.5e-53 212.6 395 46.1
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 5.5e-53 212.6 326 50.6
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 5.5e-53 212.6 329 45.6
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 1.4e-51 208.0 273 49.5
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 1.4e-51 208.0 276 50.7
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 3.0e-51 206.8 303 53.8
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 3.0e-51 206.8 195 57.4
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 1.2e-50 204.9 373 50.9
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 3.3e-50 203.4 189 57.7
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 2.8e-49 200.3 262 48.5
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 3.7e-49 199.9 223 52.9
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 1.1e-48 198.4 165 64.8
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 1.1e-48 198.4 275 47.6
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.4e-48 198.0 266 48.5
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 3.1e-48 196.8 315 41.3
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 9.1e-48 195.3 298 42.6
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.6e-47 194.5 325 49.8
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 2.0e-47 194.1 261 49.4
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 4.5e-47 193.0 324 50.9
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 1.7e-46 191.0 266 47.4
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 5.5e-45 186.0 271 48.0
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 7.2e-45 185.7 177 61.6
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.7e-44 183.7 238 46.2
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 2.0e-42 177.6 204 47.5
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 1.8e-40 171.0 394 42.6
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 1.6e-39 167.9 200 49.0
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 8.6e-38 162.2 204 44.6
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 1.6e-36 157.9 263 40.3
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 1.4e-35 154.8 181 52.5
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 6.8e-35 152.5 205 41.0
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 8.3e-33 145.6 211 39.3
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 2.4e-32 144.1 208 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 9.2e-32 142.1 202 42.1
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 1.4e-27 128.3 269 48.3
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 1.8e-19 101.3 126 53.2
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 1.4e-16 91.7 61 77.0
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.1e-13 82.0 75 61.3
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 3.2e-08 63.9 242 27.3
Cre19.g750397 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D008664 3.9e-06 57.0 133 30.1


User provided reference genes

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