Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 4.3e-68 261.2 128 100.0
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.4e-66 256.1 128 97.7
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 2.2e-64 248.8 128 93.0
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 4.9e-64 247.7 124 96.8
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 1.4e-63 246.1 124 96.8
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 1.4e-63 246.1 124 96.8
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 3.2e-63 245.0 123 95.1
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 4.2e-63 244.6 124 94.4
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 1.2e-62 243.0 124 94.4
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 5.1e-61 237.7 124 90.3
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 4.3e-60 234.6 128 87.5
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 4.3e-60 234.6 126 87.3
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 7.4e-60 233.8 126 88.1
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 7.4e-60 233.8 126 87.3
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 9.6e-60 233.4 121 89.3
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 2.8e-59 231.9 128 85.9
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.8e-59 231.9 122 86.9
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.8e-59 231.9 128 86.7
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 3.7e-59 231.5 126 84.1
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 3.7e-59 231.5 128 84.4
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 3.7e-59 231.5 124 91.1
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 4.8e-59 231.1 124 88.7
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 6.2e-59 230.7 128 83.6
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 6.2e-59 230.7 128 85.2
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 6.2e-59 230.7 124 90.3
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 6.2e-59 230.7 126 89.7
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 88.1
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.8e-58 229.2 128 84.4
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.8e-58 229.2 124 89.5
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.4e-58 228.8 128 83.6
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 3.1e-58 228.4 127 82.7
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.1e-58 228.4 126 83.3
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.1e-58 228.4 128 84.4
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 3.1e-58 228.4 124 90.3
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.1
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.1
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.1
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.1
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.1
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 5.3e-58 227.6 121 87.6
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 5.3e-58 227.6 122 85.2
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 6.9e-58 227.3 122 83.6
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 6.9e-58 227.3 122 83.6
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 1.2e-57 226.5 127 81.9
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.2e-57 226.5 128 82.8
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 1.2e-57 226.5 126 81.7
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.2e-57 226.5 128 84.4
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 1.5e-57 226.1 126 82.5
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 121 86.0
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 121 86.0
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 1.5e-57 226.1 126 81.7
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.5e-57 226.1 122 82.8
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.5e-57 226.1 122 85.2
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 2.0e-57 225.7 128 82.0
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 2.0e-57 225.7 128 82.0
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 2.0e-57 225.7 128 82.0
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.0e-57 225.7 122 82.8
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 2.0e-57 225.7 128 82.0
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 81.7
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 2.6e-57 225.3 121 89.3
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 3.4e-57 224.9 123 82.9
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 4.5e-57 224.6 127 83.5
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 4.5e-57 224.6 128 83.6
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 5.8e-57 224.2 128 82.0
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 5.8e-57 224.2 122 85.2
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 7.6e-57 223.8 128 83.6
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 1.0e-56 223.4 126 81.7
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.0e-56 223.4 126 81.0
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.0e-56 223.4 126 81.0
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 1.3e-56 223.0 127 81.1
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 1.3e-56 223.0 127 81.1
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.7e-56 222.6 126 81.0
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 1.7e-56 222.6 128 82.8
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.9e-56 221.9 126 78.6
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.9e-56 221.9 124 80.6
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 3.8e-56 221.5 128 82.0
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.8e-56 221.5 124 80.6
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 3.8e-56 221.5 127 80.3
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.8e-56 221.5 128 82.0
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 4.9e-56 221.1 122 86.9
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 4.9e-56 221.1 126 81.0
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 6.5e-56 220.7 126 81.0
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 6.5e-56 220.7 128 80.5
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 8.4e-56 220.3 127 80.3
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 8.4e-56 220.3 128 82.0
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.1e-55 219.9 124 79.8
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.1e-55 219.9 124 81.5
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.1e-55 219.9 119 84.0
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 1.1e-55 219.9 122 82.8
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 1.4e-55 219.5 122 81.1
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.4e-55 219.5 124 82.3
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.4e-55 219.5 122 81.1
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 2.5e-55 218.8 128 80.5
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 2.5e-55 218.8 126 80.2
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 2.5e-55 218.8 127 79.5
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.5e-55 218.8 126 78.6
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 2.5e-55 218.8 126 79.4
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 3.2e-55 218.4 126 77.8
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.2e-55 218.4 128 80.5
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 5.5e-55 217.6 122 82.0
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 7.1e-55 217.2 121 85.1
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 9.3e-55 216.9 128 81.2
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 9.3e-55 216.9 124 80.6
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 9.3e-55 216.9 122 80.3
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.2e-54 216.5 118 89.0
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.2e-54 216.5 127 81.9
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 1.2e-54 216.5 122 81.1
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.6e-54 216.1 127 78.7
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 2.1e-54 215.7 121 84.3
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.1e-54 215.7 124 80.6
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.5e-54 214.9 128 79.7
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 4.6e-54 214.5 121 84.3
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 6.0e-54 214.2 124 79.8
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 7.9e-54 213.8 124 80.6
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 2.3e-53 212.2 124 79.8
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.9e-53 211.5 115 81.7
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 5.1e-53 211.1 115 82.6
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 5.1e-53 211.1 124 79.8
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 3.3e-52 208.4 122 80.3
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 7.4e-52 207.2 124 77.4
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 2.1e-51 205.7 122 75.4
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 4.1e-50 201.4 125 76.8
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 9.0e-50 200.3 110 86.4
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 2.6e-49 198.7 124 75.0
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 4.5e-49 198.0 126 75.4
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 5.8e-49 197.6 107 84.1
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 7.6e-49 197.2 115 82.6
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.7e-48 196.1 107 82.2
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.7e-48 196.1 112 82.1
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.1e-47 193.4 128 74.2
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.1e-47 193.4 112 80.4
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.5e-47 192.2 103 88.3
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.2e-47 191.4 106 86.8
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.0e-45 186.8 125 72.8
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 8.7e-45 183.7 101 84.2
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 4.3e-44 181.4 100 85.0
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 5.7e-44 181.0 128 64.8
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.2e-43 179.1 136 67.6
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.2e-43 179.1 100 83.0
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.7e-40 169.5 99 79.8
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 2.2e-40 169.1 102 78.4
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.5e-40 167.2 98 79.6
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 2.5e-39 165.6 123 63.4
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 3.6e-38 161.8 102 74.5
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 5.1e-37 157.9 123 60.2
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.5e-36 156.4 125 56.8
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.5e-36 156.4 132 62.1
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.5e-36 156.4 88 77.3
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.5e-31 137.9 70 90.0
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.2e-30 136.7 124 51.6
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 3.6e-30 135.2 119 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 4.7e-30 134.8 122 54.1
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 6.3e-27 124.4 57 96.5
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.5e-25 118.2 108 55.6
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.3e-24 116.7 109 55.0
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.7e-22 109.0 77 57.1
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 1.0e-21 107.1 106 50.9
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 1.4e-21 106.7 62 82.3
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 3.0e-21 105.5 119 44.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.7e-19 99.8 81 54.3
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.7e-14 82.4 45 82.2
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 8.3e-11 70.9 35 88.6
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.0e-08 61.6 32 78.1
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 3.2e-07 58.9 35 71.4
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 5.5e-07 58.2 33 75.8


User provided reference genes

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