Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 3.6e-55 218.0 109 100.0
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 9.1e-51 203.4 110 91.8
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.4e-43 178.7 110 83.6
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 5.3e-43 177.6 110 82.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 1.1e-24 116.7 106 64.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.5e-24 116.3 107 63.6
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 2.5e-24 115.5 112 64.3
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.2e-23 113.2 104 64.4
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 1.2e-21 106.7 110 59.1
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.5e-21 106.3 111 58.6
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.5e-21 106.3 112 58.0
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.0e-21 105.9 102 54.9
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.6e-21 105.5 81 69.1
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.3e-20 103.2 111 56.8
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.3e-20 103.2 111 56.8
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.7e-20 102.8 113 58.4
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 2.2e-20 102.4 113 56.6
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 4.9e-20 101.3 111 56.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.4e-19 99.0 110 55.5
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.1e-19 98.2 67 77.6
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 5.4e-19 97.8 103 56.3
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 5.4e-19 97.8 87 60.9
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 5.4e-19 97.8 106 53.8
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 7.0e-19 97.4 111 53.2
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 9.2e-19 97.1 100 60.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.6e-18 96.3 79 65.8
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 2.0e-18 95.9 90 67.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.0e-18 95.9 105 51.4
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 3.5e-18 95.1 65 78.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 5.9e-18 94.4 114 54.4
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 7.8e-18 94.0 102 52.9
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 1.3e-17 93.2 111 50.5
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.3e-17 93.2 86 60.5
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-17 92.8 86 59.3
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-17 92.8 86 59.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.8e-17 91.7 111 50.5
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 6.6e-17 90.9 102 51.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 8.6e-17 90.5 112 49.1
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 8.6e-17 90.5 80 67.5
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.1e-16 90.1 111 50.5
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.5e-16 89.7 115 54.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.5e-16 89.7 104 52.9
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.9e-16 89.4 111 53.2
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.9e-16 89.4 111 49.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.3e-16 88.2 111 48.6
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 4.3e-16 88.2 102 52.9
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.3e-16 88.2 102 52.9
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.3e-16 88.2 82 61.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 5.6e-16 87.8 111 52.3
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 7.3e-16 87.4 108 48.1
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.2e-15 86.7 102 52.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.2e-15 86.7 102 51.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.6e-15 86.3 103 49.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-15 86.3 111 51.4
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.8e-15 85.5 86 60.5
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 3.6e-15 85.1 105 50.5
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 3.6e-15 85.1 104 51.0
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 4.7e-15 84.7 103 48.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.1e-15 84.3 106 48.1
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 6.1e-15 84.3 109 53.2
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 8.0e-15 84.0 82 59.8
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.4e-14 83.2 72 62.5
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.8e-14 82.8 110 49.1
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.3e-14 82.4 72 61.1
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.3e-14 82.4 78 56.4
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 5.2e-14 81.3 76 59.2
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.2e-13 80.1 68 67.6
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.2e-13 80.1 110 49.1
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.0e-13 79.3 76 57.9
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 3.4e-13 78.6 86 55.8
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.7e-12 76.3 100 42.0
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-12 76.3 105 50.5
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 2.2e-12 75.9 102 47.1
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 2.9e-12 75.5 65 61.5
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 2.9e-12 75.5 65 61.5
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 2.9e-12 75.5 60 68.3
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-12 75.1 89 51.7
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 3.7e-12 75.1 89 51.7
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.7e-12 75.1 85 54.1
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 4.9e-12 74.7 135 42.2
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.9e-12 74.7 90 51.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 8.3e-12 73.9 75 56.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 8.3e-12 73.9 72 54.2
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 8.3e-12 73.9 109 47.7
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.1e-11 73.6 85 50.6
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.4e-11 73.2 88 50.0
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.9e-11 72.8 85 47.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 2.4e-11 72.4 109 46.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.4e-11 72.4 70 57.1
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 3.2e-11 72.0 94 44.7
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 3.2e-11 72.0 102 44.1
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 3.2e-11 72.0 95 47.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 4.1e-11 71.6 72 55.6
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 5.4e-11 71.2 83 49.4
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 7.0e-11 70.9 88 52.3
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 7.0e-11 70.9 72 54.2
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 9.2e-11 70.5 82 50.0
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.2e-11 70.5 70 54.3
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.6e-10 69.7 56 66.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 2.0e-10 69.3 58 63.8
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 2.0e-10 69.3 43 81.4
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 2.7e-10 68.9 81 51.9
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.6e-10 68.2 106 39.6
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 4.6e-10 68.2 45 75.6
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 6.0e-10 67.8 70 52.9
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 7.8e-10 67.4 58 62.1
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 7.8e-10 67.4 58 62.1
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.0e-09 67.0 67 55.2
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.3e-09 66.6 59 66.1
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-09 66.2 58 60.3
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.7e-09 66.2 58 60.3
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 2.3e-09 65.9 58 63.8
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 2.3e-09 65.9 58 62.1
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 2.3e-09 65.9 58 63.8
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 2.3e-09 65.9 58 62.1
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 2.3e-09 65.9 58 63.8
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.9e-09 65.1 61 62.3
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.9e-09 65.1 58 65.5
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 6.6e-09 64.3 128 35.9
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 8.6e-09 63.9 57 59.6
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.5e-08 63.2 85 42.4
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.9e-08 62.8 105 41.0
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-08 62.8 105 41.0
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.9e-08 62.8 105 41.0
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 3.3e-08 62.0 81 43.2
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.6e-07 59.7 98 41.8
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 4.7e-07 58.2 56 57.1
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 6.2e-07 57.8 73 49.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.4e-06 56.6 66 48.5
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 2.3e-06 55.8 69 44.9
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 2.3e-06 55.8 62 46.8
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.0e-06 55.1 103 40.8
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.0e-06 55.1 103 40.8
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 8.9e-06 53.9 100 36.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 8.9e-06 53.9 78 38.5


User provided reference genes

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