Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 6.5e-72 273.9 129 100.0
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.4e-61 239.6 128 89.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 6.7e-61 237.3 128 88.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 6.7e-61 237.3 128 88.3
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.7e-59 232.6 125 88.8
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 5.9e-57 224.2 125 80.8
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.0e-56 223.4 129 82.9
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.0e-56 221.1 128 79.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 6.5e-56 220.7 128 79.7
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 8.5e-56 220.3 124 82.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.1e-55 219.9 128 78.9
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 5.5e-55 217.6 125 79.2
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 9.4e-55 216.9 126 81.0
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 6.1e-54 214.2 122 82.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 7.9e-54 213.8 122 81.1
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.3e-53 212.2 122 77.9
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.1e-52 209.9 127 81.1
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 3.7e-51 204.9 126 76.2
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.7e-51 204.9 122 76.2
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.4e-50 203.0 122 76.2
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.8e-50 202.6 122 76.2
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.8e-50 202.6 122 78.7
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.1e-50 201.4 122 75.4
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 4.1e-50 201.4 124 79.0
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 5.3e-50 201.1 122 75.4
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 7.0e-50 200.7 122 76.2
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 9.1e-50 200.3 122 74.6
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 1.6e-49 199.5 122 74.6
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.6e-49 198.7 122 74.6
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 3.5e-49 198.4 122 75.4
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 3.5e-49 198.4 122 73.0
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 5.9e-49 197.6 122 73.8
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 7.7e-49 197.2 122 76.2
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.0e-48 196.8 121 76.0
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.0e-48 196.8 128 73.4
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.3e-48 196.4 123 72.4
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.3e-48 196.4 122 73.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.7e-48 196.1 122 73.8
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.2e-48 195.7 122 73.0
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 2.2e-48 195.7 122 73.8
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.9e-48 195.3 122 74.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.9e-48 195.3 122 74.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 5.0e-48 194.5 122 74.6
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 6.5e-48 194.1 123 71.5
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 6.5e-48 194.1 123 70.7
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 8.5e-48 193.7 129 72.1
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 8.5e-48 193.7 129 72.1
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.1e-47 193.4 122 72.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.5e-47 193.0 122 73.8
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.9e-47 192.6 123 69.9
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 2.5e-47 192.2 122 70.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 3.2e-47 191.8 122 70.5
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.2e-47 191.8 123 70.7
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.2e-47 191.8 122 72.1
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.2e-47 191.4 122 72.1
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.2e-47 191.4 122 70.5
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 5.5e-47 191.0 122 70.5
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 7.2e-47 190.7 123 70.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 9.4e-47 190.3 122 69.7
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.2e-46 189.9 122 67.2
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.1e-46 189.1 124 67.7
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.1e-46 189.1 122 69.7
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.1e-46 189.1 122 69.7
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.1e-46 189.1 123 68.3
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 2.7e-46 188.7 122 69.7
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.7e-46 188.7 123 68.3
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.7e-46 188.7 122 70.5
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.6e-46 188.3 122 71.3
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.6e-46 188.3 125 67.2
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 3.6e-46 188.3 122 68.9
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.6e-46 188.3 123 67.5
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.7e-46 188.0 123 67.5
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 6.1e-46 187.6 122 68.9
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 8.0e-46 187.2 122 70.5
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 8.0e-46 187.2 133 68.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.0e-45 186.8 123 69.1
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.4e-45 186.4 123 67.5
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.8e-45 186.0 122 69.7
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.8e-45 186.0 123 68.3
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.8e-45 186.0 122 68.9
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.8e-45 186.0 122 68.9
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.8e-45 186.0 122 71.3
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 2.3e-45 185.7 122 68.0
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 2.3e-45 185.7 122 68.9
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.0e-45 185.3 123 68.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-45 185.3 118 73.7
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 3.0e-45 185.3 123 68.3
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.0e-45 185.3 123 71.5
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.0e-45 185.3 123 71.5
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 5.2e-45 184.5 126 65.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 6.7e-45 184.1 123 69.9
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 6.7e-45 184.1 122 67.2
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 6.7e-45 184.1 122 68.0
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 8.8e-45 183.7 122 67.2
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.5e-44 183.0 122 68.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.5e-44 183.0 122 68.9
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.5e-44 183.0 122 69.7
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 2.6e-44 182.2 122 69.7
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.6e-44 182.2 122 66.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.3e-44 181.8 122 68.9
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 3.3e-44 181.8 122 69.7
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 3.3e-44 181.8 122 69.7
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.4e-44 181.4 123 68.3
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.7e-44 181.0 121 70.2
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 9.7e-44 180.3 123 66.7
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 2.2e-43 179.1 118 72.0
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.8e-43 178.7 122 67.2
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 8.2e-43 177.2 122 64.8
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 3.1e-42 175.3 122 64.8
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 5.3e-42 174.5 155 56.1
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 5.3e-42 174.5 122 65.6
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 7.0e-42 174.1 122 65.6
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.7e-41 172.2 125 60.8
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 7.7e-41 170.6 114 71.1
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 7.7e-41 170.6 114 71.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.0e-40 170.2 114 70.2
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.7e-40 169.5 107 72.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.2e-40 169.1 114 69.3
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.1e-39 166.8 125 57.6
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.9e-39 166.0 110 70.0
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 3.2e-39 165.2 120 63.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.2e-39 165.2 126 59.5
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 4.2e-39 164.9 121 61.2
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.2e-39 164.1 125 58.4
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.6e-38 162.9 114 69.3
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 3.6e-38 161.8 111 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 4.7e-38 161.4 120 61.7
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 8.0e-38 160.6 110 66.4
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.8e-37 159.5 106 71.7
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 8.8e-37 157.1 119 61.3
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.3e-35 153.3 125 54.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-35 152.9 104 70.2
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.2e-35 152.5 131 55.0
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 4.1e-34 148.3 100 68.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 4.1e-34 148.3 123 60.2
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.6e-33 146.4 122 55.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-32 143.7 100 67.0
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 1.7e-32 142.9 99 66.7
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 3.8e-32 141.7 119 54.6
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 8.6e-32 140.6 125 51.2
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.5e-31 139.8 104 63.5
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 3.6e-30 135.2 106 57.5
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 3.6e-30 135.2 106 57.5
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 8.0e-30 134.0 85 74.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 6.8e-29 131.0 123 48.8
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.8e-26 122.9 127 46.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 4.5e-25 118.2 110 54.5
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 7.3e-23 110.9 62 74.2
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 8.9e-21 104.0 65 70.8
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.1e-18 95.1 66 59.1
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.2e-17 93.6 124 42.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.9e-15 86.3 118 34.7
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 8.0e-14 80.9 123 39.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 5.4e-10 68.2 74 51.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 2.7e-09 65.9 35 80.0
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 2.8e-06 55.8 141 24.1


User provided reference genes

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