Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 6.7e-91 337.4 181 100.0
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 2.2e-70 269.2 186 86.6
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 4.8e-57 224.9 192 69.3
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 4.2e-53 211.8 178 70.2
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 5.2e-51 204.9 189 68.3
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.6e-42 176.0 194 58.2
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 4.9e-41 171.8 204 55.9
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 1.4e-40 170.2 208 54.3
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 2.0e-39 166.4 219 51.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 1.0e-38 164.1 236 49.2
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 1.7e-38 163.3 182 59.3
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.7e-38 163.3 187 57.2
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 3.9e-38 162.2 191 53.9
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 5.0e-38 161.8 191 53.9
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 1.1e-37 160.6 191 51.8
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 4.3e-37 158.7 194 51.5
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.0e-35 154.1 193 51.3
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 3.7e-33 145.6 237 43.5
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 3.7e-33 145.6 217 45.6
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 6.0e-31 138.3 193 46.6
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 6.0e-31 138.3 185 50.3
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.3e-30 137.1 197 48.2
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.7e-30 136.7 197 48.2
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 3.0e-30 136.0 219 46.1
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 3.0e-30 136.0 192 51.0
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.9e-29 133.3 212 44.8
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.1e-28 129.8 200 47.0
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 2.3e-27 126.3 179 49.2
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.0e-27 125.6 193 48.2
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 4.4e-26 122.1 193 48.2
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 2.9e-25 119.4 191 44.0
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.2e-23 114.0 183 46.4
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 2.1e-23 113.2 209 41.1
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 2.1e-23 113.2 186 47.8
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 3.5e-23 112.5 195 41.5
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 4.6e-23 112.1 203 41.9
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 6.0e-23 111.7 202 40.1
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.0e-22 110.9 202 40.6
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.9e-22 109.0 210 41.0
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.9e-21 106.7 200 40.5
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.9e-21 106.7 113 54.9
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 3.3e-21 105.9 193 43.5
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 4.3e-21 105.5 198 44.9
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 5.6e-21 105.1 206 42.2
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 5.6e-21 105.1 197 42.6
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.5e-21 104.4 199 40.2
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.7e-20 102.1 198 40.4
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 6.2e-20 101.7 199 41.7
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 6.8e-19 98.2 189 39.7
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.5e-18 97.1 178 39.3
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 1.3e-17 94.0 192 38.5
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.7e-17 93.6 201 38.3
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 4.9e-17 92.0 192 34.9
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 2.4e-16 89.7 183 39.9
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 5.4e-16 88.6 156 42.9
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 7.1e-16 88.2 230 34.8
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 9.2e-16 87.8 199 33.7
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.2e-15 87.4 197 39.6
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 1.6e-15 87.0 200 33.5
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.6e-15 87.0 202 33.2
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.5e-15 85.9 196 35.2
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 4.6e-15 85.5 196 35.7
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 4.6e-15 85.5 197 35.5
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 6.0e-15 85.1 181 40.3
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 7.8e-15 84.7 192 36.5
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 1.7e-14 83.6 210 32.4
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.3e-14 83.2 207 31.4
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 6.6e-14 81.6 200 33.5
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 6.6e-14 81.6 202 33.2
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 6.6e-14 81.6 232 33.6
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 8.6e-14 81.3 222 30.2
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 8.6e-14 81.3 202 33.7
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-13 80.9 200 34.0
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 1.5e-13 80.5 207 32.4
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 1.5e-13 80.5 207 32.4
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.5e-13 80.5 206 35.0
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.9e-13 80.1 192 31.8
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 2.5e-13 79.7 189 39.7
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 3.3e-13 79.3 210 34.3
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 3.3e-13 79.3 231 34.2
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 9.6e-13 77.8 225 31.6
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 9.6e-13 77.8 194 37.1
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.2e-12 77.4 179 35.2
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 8.1e-12 74.7 202 30.7
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 8.1e-12 74.7 77 54.5
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 4.0e-11 72.4 206 33.0
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 4.0e-11 72.4 236 31.4
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 6.8e-11 71.6 189 30.2
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 2.0e-10 70.1 208 34.6
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 4.4e-10 68.9 68 54.4
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 5.8e-10 68.6 178 31.5
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 7.6e-10 68.2 66 53.0
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.3e-09 67.4 228 32.5
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 1.7e-09 67.0 170 35.3
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 2.9e-09 66.2 197 32.0
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 4.9e-09 65.5 204 33.8
Rhsim13G0035000 Rhododendron simsii HOM05D008367 ORTHO05D010529 1.1e-08 64.3 192 31.2
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.4e-08 63.9 162 34.6
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 1.9e-08 63.5 123 39.8
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 5.4e-08 62.0 189 32.8
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 5.4e-08 62.0 184 31.0
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.2e-07 60.8 173 33.5
Actinidia25788 Actinidia chinensis HOM05D008367 ORTHO05D010529 1.6e-07 60.5 179 31.8
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 2.1e-07 60.1 174 32.8
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 2.1e-07 60.1 182 31.9
Phvul.001G161100 Phaseolus vulgaris HOM05D008367 ORTHO05D010529 3.5e-07 59.3 168 31.5
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 4.6e-07 58.9 197 29.9
Migut.N02203 Erythranthe guttata HOM05D008367 ORTHO05D010529 4.6e-07 58.9 201 32.3
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 4.6e-07 58.9 185 32.4
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 2.3e-06 56.6 183 30.6


User provided reference genes

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