Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 4.3e-68 261.2 129 100.0
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 2.0e-44 182.6 123 77.2
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 5.3e-42 174.5 123 71.5
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.5e-36 156.4 125 64.0
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 4.8e-35 151.4 126 61.1
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.4e-34 149.8 122 63.1
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 9.1e-34 147.1 121 62.8
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.5e-31 139.8 122 55.7
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 3.7e-27 125.2 123 52.8
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 9.5e-23 110.5 84 67.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.3e-16 90.1 125 45.6
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 2.3e-16 89.4 122 41.8
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 3.0e-16 89.0 128 37.5
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.6e-16 87.8 125 44.8
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.1e-15 87.0 121 43.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.9e-15 86.3 56 64.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 2.5e-15 85.9 121 38.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.6e-14 83.2 129 39.5
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.6e-14 82.0 130 39.2
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 4.4e-12 75.1 125 38.4
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 5.8e-12 74.7 124 38.7
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 7.5e-12 74.3 122 36.9
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 9.8e-12 73.9 122 36.9
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.3e-11 73.6 115 34.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.3e-11 73.6 124 39.5
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 2.2e-11 72.8 113 36.3
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.2e-11 72.8 124 39.5
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.2e-11 72.8 124 33.9
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 3.7e-11 72.0 126 38.1
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 3.7e-11 72.0 139 33.8
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 6.4e-11 71.2 128 35.9
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 8.3e-11 70.9 143 35.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 8.3e-11 70.9 60 53.3
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.9e-10 69.7 123 35.0
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 2.4e-10 69.3 122 37.7
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 3.2e-10 68.9 126 34.9
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 3.2e-10 68.9 138 31.9
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 5.4e-10 68.2 108 35.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 7.0e-10 67.8 83 42.2
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.2e-09 67.0 69 50.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.6e-09 66.6 52 55.8
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.0e-09 66.2 123 33.3
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 2.7e-09 65.9 61 47.5
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 3.5e-09 65.5 123 33.3
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 3.5e-09 65.5 45 64.4
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 4.6e-09 65.1 127 33.1
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 6.0e-09 64.7 182 26.9
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 7.8e-09 64.3 44 63.6
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.0e-08 63.9 119 36.1
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.3e-08 63.5 123 34.1
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.7e-08 63.2 118 38.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 1.7e-08 63.2 108 36.1
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 3.0e-08 62.4 126 33.3
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.0e-08 62.4 120 35.8
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.9e-08 62.0 72 45.8
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.0e-08 61.6 49 53.1
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 5.0e-08 61.6 74 45.9
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 5.0e-08 61.6 45 57.8
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 5.0e-08 61.6 44 63.6
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 6.6e-08 61.2 46 58.7
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 6.6e-08 61.2 43 55.8
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 6.6e-08 61.2 128 32.8
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 6.6e-08 61.2 44 61.4
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 8.6e-08 60.8 49 49.0
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.1e-07 60.5 124 33.9
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.5e-07 60.1 46 56.5
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.5e-07 60.1 74 40.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.5e-07 60.1 73 43.8
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.9e-07 59.7 73 45.2
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.9e-07 59.7 115 33.0
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.9e-07 59.7 48 54.2
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 2.5e-07 59.3 67 47.8
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 2.5e-07 59.3 107 36.4
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.5e-07 59.3 44 61.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.5e-07 59.3 44 61.4
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 3.3e-07 58.9 51 54.9
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 3.3e-07 58.9 74 37.8
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 4.3e-07 58.5 78 43.6
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 4.3e-07 58.5 104 37.5
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 4.3e-07 58.5 94 40.4
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 4.3e-07 58.5 94 40.4
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 4.3e-07 58.5 109 32.1
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 5.6e-07 58.2 49 53.1
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 5.6e-07 58.2 44 59.1
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 7.3e-07 57.8 46 56.5
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 7.3e-07 57.8 46 56.5
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 7.3e-07 57.8 119 34.5
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.2e-06 57.0 46 54.3
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.6e-06 56.6 66 45.5
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-06 56.2 45 57.8
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-06 56.2 73 42.5
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 2.1e-06 56.2 45 57.8
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.1e-06 56.2 76 43.4
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.1e-06 56.2 116 32.8
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.1e-06 56.2 71 42.3
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.8e-06 55.8 104 31.7
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.8e-06 55.8 118 35.6


User provided reference genes

Program Settings