Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 7.7e-250 866.7 440 100.0
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.3e-193 679.9 433 81.3
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.3e-192 674.9 441 78.2
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 5.1e-161 571.6 441 70.3
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 9.7e-160 567.4 451 66.1
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.8e-159 565.8 444 68.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.0e-157 559.7 417 68.6
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.7e-156 556.6 430 69.8
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 2.2e-156 556.2 461 65.3
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 2.2e-156 556.2 458 67.2
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.9e-156 555.8 458 67.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 3.8e-156 555.4 444 66.2
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 6.5e-156 554.7 448 67.2
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.9e-155 553.1 456 65.1
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 3.2e-155 552.4 449 64.4
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 5.5e-155 551.6 452 65.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.2e-155 551.2 452 64.6
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.2e-155 551.2 453 64.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 3.6e-154 548.9 456 65.1
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 6.1e-154 548.1 451 64.7
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.8e-153 546.6 431 65.4
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.7e-153 544.7 453 63.8
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 4.3e-152 542.0 428 66.4
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-150 537.0 388 69.8
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 2.2e-148 529.6 450 61.3
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.9e-148 529.3 447 64.2
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 6.5e-148 528.1 447 62.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.1e-147 527.3 428 65.4
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.4e-147 526.9 451 62.1
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 2.5e-147 526.2 392 68.4
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.5e-147 526.2 447 64.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.5e-147 526.2 440 62.7
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 7.2e-147 524.6 451 63.2
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 7.9e-146 521.2 461 63.1
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 3.0e-145 519.2 418 66.0
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 3.0e-145 519.2 433 63.5
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 5.1e-145 518.5 438 63.0
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 2.0e-144 516.5 450 64.2
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.5e-141 505.8 405 66.2
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 2.7e-138 496.1 414 64.3
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 2.3e-137 493.0 446 60.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.1e-134 484.2 433 59.4
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 1.4e-134 483.8 455 60.0
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 2.0e-133 479.9 452 58.2
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 5.9e-133 478.4 449 59.5
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.0e-132 475.3 447 58.4
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.5e-131 473.8 447 58.2
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.2e-131 472.6 446 58.7
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.4e-129 467.2 434 56.0
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.3e-129 466.5 442 57.2
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 4.0e-129 465.7 390 61.5
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 5.2e-129 465.3 391 61.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 5.2e-129 465.3 434 55.8
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.2e-128 464.2 446 57.4
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.6e-128 463.0 412 60.2
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 3.4e-128 462.6 444 58.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 4.4e-128 462.2 421 59.6
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.3e-127 460.7 427 59.5
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.3e-127 460.7 427 59.5
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.7e-127 460.3 446 56.3
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.8e-127 459.5 446 58.7
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.8e-127 459.5 444 57.9
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.7e-127 459.1 450 58.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.3e-127 458.4 448 56.0
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.8e-126 456.8 427 58.8
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.1e-126 455.7 416 58.2
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 7.0e-126 454.9 424 58.7
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 9.1e-126 454.5 439 57.4
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 2.0e-125 453.4 248 91.1
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 2.0e-125 453.4 450 56.7
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.0e-125 453.4 327 69.7
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 4.5e-125 452.2 424 58.5
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 4.5e-125 452.2 431 57.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 5.9e-125 451.8 390 57.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.7e-124 450.3 430 57.2
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 3.8e-124 449.1 423 57.7
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.1e-123 447.6 405 59.0
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 3.2e-123 446.0 436 56.7
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 7.2e-123 444.9 436 56.4
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 9.4e-123 444.5 387 59.4
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.1e-122 443.4 392 60.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.7e-122 442.2 343 66.8
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 8.0e-122 441.4 424 55.7
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.2e-120 437.6 448 55.4
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.4e-120 436.0 449 55.2
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 5.7e-120 435.3 432 55.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 5.7e-120 435.3 432 55.8
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 3.7e-119 432.6 437 55.6
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.8e-118 430.3 447 53.7
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 7.0e-118 428.3 416 56.7
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.5e-117 426.0 389 58.4
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 6.6e-116 421.8 389 56.8
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.6e-114 417.2 433 52.2
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 4.7e-114 415.6 444 55.4
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.6e-112 409.8 343 63.8
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.4e-112 409.5 382 57.1
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.8e-110 403.7 378 57.1
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.6e-109 400.6 416 53.8
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 7.8e-109 398.3 382 55.8
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.7e-108 397.1 394 54.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.0e-105 387.9 345 58.0
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 4.0e-105 386.0 395 53.9
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 5.2e-105 385.6 424 50.7
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 5.8e-104 382.1 424 52.4
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.8e-97 360.5 333 61.9
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.2e-96 357.8 450 48.0
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 9.2e-94 348.2 334 58.4
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.2e-82 311.2 360 52.5
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 2.8e-82 310.1 363 52.3
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 3.6e-82 309.7 422 43.4
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 2.4e-78 297.0 227 67.8
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.1e-77 293.9 406 43.6
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.7e-77 293.5 388 45.4
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 6.2e-74 282.3 455 46.4
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 3.8e-71 273.1 218 64.7
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.1e-70 271.6 290 55.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 3.5e-61 240.0 218 55.0
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.7e-58 229.9 387 37.7
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.8e-57 227.6 390 36.9
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.5e-54 216.1 396 37.4
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 1.9e-51 207.6 408 38.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 4.4e-27 126.7 118 58.5
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 8.2e-26 122.5 417 29.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 8.2e-26 122.5 77 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 5.2e-20 103.2 266 31.6
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.1e-17 95.5 175 34.9
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 9.1e-17 92.4 411 25.8
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 9.4e-14 82.4 207 29.5
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.6e-11 74.3 74 54.1
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.7e-11 73.2 146 32.2


User provided reference genes

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