Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.5e-195 686.0 343 100.0
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.1e-155 553.5 319 86.2
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 2.3e-153 545.8 319 85.3
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 5.2e-145 518.1 283 91.5
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.5e-139 500.0 344 73.8
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 6.4e-135 484.6 328 75.3
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 4.8e-130 468.4 305 76.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.3e-127 460.3 351 69.2
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 5.1e-124 448.4 354 66.7
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 7.4e-123 444.5 354 66.4
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.6e-106 390.2 317 65.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.4e-105 386.3 317 63.7
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.1e-105 385.6 317 64.0
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.5e-104 383.6 295 65.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.5e-104 383.6 295 65.8
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.6e-104 382.9 286 69.6
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 6.5e-103 378.3 314 62.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.4e-102 377.1 318 64.2
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.9e-102 376.7 265 70.2
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.6e-101 373.6 313 62.9
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.1e-101 373.2 314 61.5
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 2.1e-101 373.2 312 62.8
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.6e-101 372.5 318 62.6
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.1e-99 367.5 265 68.7
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.5e-99 367.1 236 72.5
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.0e-99 366.7 295 64.7
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.3e-99 365.9 222 75.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.3e-99 365.9 310 62.9
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 4.3e-99 365.5 302 63.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.4e-99 364.8 245 73.9
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 9.7e-99 364.4 311 60.5
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-98 364.0 262 69.5
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.3e-98 364.0 313 62.0
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.7e-98 363.6 302 62.9
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 6.3e-98 361.7 312 59.3
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 8.2e-98 361.3 226 74.8
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.1e-97 360.9 254 67.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.8e-97 360.1 327 58.7
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 2.4e-97 359.8 312 59.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 3.1e-97 359.4 219 74.9
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 4.1e-97 359.0 226 77.0
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 5.3e-97 358.6 313 60.7
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 6.9e-97 358.2 319 58.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 9.1e-97 357.8 293 62.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.5e-96 357.1 300 60.7
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.0e-96 356.7 239 72.8
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.6e-96 356.3 263 65.8
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.6e-96 356.3 316 58.9
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.4e-96 355.9 302 60.9
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.0e-95 354.4 244 70.1
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.8e-95 352.4 222 70.7
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 6.5e-95 351.7 220 72.3
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 8.5e-95 351.3 311 58.5
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 8.5e-95 351.3 271 64.9
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-94 349.4 218 74.8
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 4.2e-94 349.0 251 67.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.2e-94 349.0 234 68.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 5.5e-94 348.6 235 70.6
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.2e-93 347.4 239 68.2
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-93 347.1 383 51.4
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.1e-93 346.7 237 73.0
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.7e-93 346.3 228 71.9
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.7e-93 346.3 242 71.1
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.0e-92 344.4 296 61.1
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.0e-92 344.4 215 75.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-92 344.0 228 71.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.8e-92 343.6 243 67.1
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 8.8e-92 341.3 233 68.7
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.1e-91 340.9 298 60.1
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 1.1e-91 340.9 243 67.1
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.5e-91 340.5 263 65.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.0e-91 340.1 242 66.9
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 2.6e-91 339.7 331 54.1
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 3.3e-91 339.3 245 65.7
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 5.7e-91 338.6 298 57.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 5.7e-91 338.6 298 58.4
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 9.7e-91 337.8 230 68.7
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.2e-90 336.7 289 59.5
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 4.8e-90 335.5 241 70.1
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 4.8e-90 335.5 304 56.2
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.8e-90 335.5 225 67.6
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 6.3e-90 335.1 219 72.1
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 6.3e-90 335.1 214 70.6
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.3e-90 335.1 223 70.9
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.1e-89 334.3 303 57.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.1e-89 334.3 249 64.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.4e-89 333.2 315 56.5
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 2.4e-89 333.2 250 64.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.2e-88 330.9 263 62.0
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 1.2e-88 330.9 239 67.8
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.2e-88 330.9 239 65.3
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 2.0e-88 330.1 245 64.5
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.5e-88 329.3 204 73.5
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 5.9e-88 328.6 229 68.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.3e-87 327.4 194 74.2
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.2e-87 326.6 340 53.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 3.8e-87 325.9 231 67.5
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 5.0e-87 325.5 240 66.7
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.5e-87 324.7 221 68.8
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.9e-86 323.6 321 53.3
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.9e-86 323.6 299 57.2
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.9e-86 323.6 254 61.8
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 3.2e-86 322.8 240 64.6
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 4.2e-86 322.4 299 56.9
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 4.2e-86 322.4 299 56.9
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 8.0e-85 318.2 236 66.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 3.0e-84 316.2 216 68.5
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.3e-83 312.8 291 55.7
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.9e-80 302.0 269 61.7
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.1e-78 297.7 343 52.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.7e-77 293.1 404 41.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.0e-76 291.2 189 73.0
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.0e-76 289.7 200 70.5
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.5e-75 287.3 264 60.6
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 8.5e-71 271.6 203 65.0
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 4.7e-69 265.8 209 58.9
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-68 264.6 225 60.9
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.5e-67 260.8 230 58.3
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.8e-66 256.5 234 57.7
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.1e-65 252.7 299 49.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.5e-62 244.2 218 57.8
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.4e-57 226.9 260 48.8
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.2e-56 224.6 129 73.6
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.6e-56 224.2 123 80.5
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.7e-56 223.4 123 80.5
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.5e-56 223.0 175 59.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.3e-55 221.1 162 63.0
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 9.5e-54 214.9 131 74.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.2e-51 208.0 190 55.8
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.1e-49 201.4 168 60.1
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.9e-44 181.8 156 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 4.1e-41 172.9 123 61.0
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.4e-35 152.9 199 40.2
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.1e-31 139.4 86 73.3
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 6.8e-28 129.0 84 70.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.5e-24 116.7 125 51.2
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.9e-16 89.0 114 50.9
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.7e-15 87.8 123 46.3
VMungo0720G1819 Vigna mungo HOM05D005134 ORTHO05D006548 7.1e-09 65.9 55 63.6
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-08 64.7 75 53.3
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-07 62.0 32 78.1


User provided reference genes

Program Settings