Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.8e-110 404.1 304 100.0
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.8e-86 324.3 318 86.8
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.8e-81 307.8 315 84.4
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 2.8e-79 300.4 315 79.7
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.6e-42 178.3 175 56.0
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.4e-41 175.3 317 65.3
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.2e-37 162.2 172 53.5
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.0e-36 159.1 169 53.3
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.0e-36 159.1 174 54.0
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.7e-36 158.3 169 50.3
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.9e-36 157.5 173 50.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 7.3e-35 152.9 216 45.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-34 152.1 172 48.8
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.1e-34 151.4 170 48.8
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 3.6e-34 150.6 170 47.6
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.0e-33 149.1 171 49.7
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.0e-33 149.1 171 49.7
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 6.8e-33 146.4 166 48.2
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-32 145.6 176 48.3
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-32 145.6 176 48.3
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.2e-32 145.6 167 47.9
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 2.6e-32 144.4 166 45.2
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.8e-32 142.5 172 47.7
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 2.9e-31 141.0 163 49.1
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 6.4e-31 139.8 164 45.7
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 6.4e-31 139.8 164 45.7
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 8.3e-31 139.4 163 48.5
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.4e-30 138.7 166 45.8
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.4e-30 138.7 161 45.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.4e-30 138.7 172 48.3
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.2e-30 137.5 98 66.3
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 4.1e-30 137.1 184 45.7
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 7.0e-30 136.3 166 45.2
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.7e-29 134.4 177 43.5
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 3.5e-29 134.0 163 47.2
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 4.6e-29 133.7 130 55.4
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 5.9e-29 133.3 180 43.9
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.3e-28 132.1 172 46.5
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.3e-28 132.1 170 44.1
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.3e-28 132.1 168 46.4
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 2.3e-28 131.3 159 46.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 2.3e-28 131.3 159 47.2
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 3.0e-28 131.0 152 50.7
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 3.0e-28 131.0 169 46.7
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 6.6e-28 129.8 122 53.3
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.5e-27 128.6 179 41.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.5e-27 128.6 167 44.3
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 1.9e-27 128.3 170 45.9
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.3e-27 127.5 96 61.5
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 4.3e-27 127.1 156 48.1
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 4.3e-27 127.1 171 43.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.2e-25 120.2 172 43.6
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 8.9e-25 119.4 172 43.0
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 1.2e-24 119.0 99 56.6
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.0e-24 118.2 144 48.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-24 117.9 173 42.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-24 117.9 173 42.8
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 5.8e-24 116.7 175 41.7
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 7.5e-24 116.3 170 43.5
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.2e-23 114.8 145 44.8
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 6.4e-23 113.2 169 43.8
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 8.3e-23 112.8 179 40.8
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.4e-22 112.1 169 41.4
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.2e-21 109.0 178 40.4
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.0e-21 108.2 168 41.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.0e-21 108.2 165 41.2
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.7e-21 107.8 132 51.5
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 6.0e-21 106.7 137 45.3
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.7e-20 105.1 76 67.1
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.7e-20 105.1 174 39.1
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 6.6e-20 103.2 167 40.7
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 6.6e-20 103.2 170 40.6
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 5.6e-19 100.1 98 54.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 9.5e-19 99.4 139 46.0
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 2.8e-18 97.8 170 37.1
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 6.2e-18 96.7 137 36.5
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 8.1e-18 96.3 182 35.2
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.4e-17 95.5 76 57.9
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 3.1e-17 94.4 126 46.0
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 3.1e-17 94.4 135 43.0
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 3.1e-17 94.4 148 39.9
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 5.2e-17 93.6 155 39.4
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 8.9e-17 92.8 182 33.5
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.2e-15 88.2 139 40.3
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.9e-15 87.8 155 37.4
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.9e-15 87.8 139 40.3
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 3.7e-15 87.4 155 36.1
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 4.9e-15 87.0 153 37.9
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 1.1e-14 85.9 196 32.1
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 3.5e-13 80.9 69 59.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.1e-11 75.9 135 37.0
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.1e-11 75.9 92 42.4
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.3e-09 68.2 114 38.6
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 3.1e-09 67.8 76 47.4
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 9.9e-08 62.8 43 60.5
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.3e-07 62.4 43 60.5
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.2e-07 61.6 94 38.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.2e-07 61.6 94 38.3
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 2.2e-07 61.6 43 62.8
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 1.4e-06 58.9 44 54.5
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 3.2e-06 57.8 97 37.1
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 5.4e-06 57.0 75 37.3
Zm00001eb151420 Zea mays HOM05D037632 ORTHO05D009568 5.4e-06 57.0 61 49.2
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 9.2e-06 56.2 94 29.8


User provided reference genes

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