Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G156850 Glycine max HOM05D002553 ORTHO05D002767 1.5e-180 636.0 307 100.0
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 6.6e-123 444.5 249 82.7
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 2.5e-122 442.6 249 83.1
Glyma.19G237000 Glycine max HOM05D002553 ORTHO05D002767 4.3e-122 441.8 249 83.1
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 9.5e-122 440.7 249 82.3
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 1.6e-121 439.9 249 81.5
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.6e-121 439.9 249 83.9
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 2.6e-119 432.6 249 80.7
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 1.7e-118 429.9 249 81.9
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 2.2e-118 429.5 248 81.5
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 5.4e-117 424.9 249 79.5
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 3.3e-114 415.6 248 77.0
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 2.8e-113 412.5 249 76.7
Dinv22901 Davidia involucrata HOM05D002553 ORTHO05D002767 1.4e-112 410.2 249 76.3
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 1.8e-112 409.8 248 76.6
Dinv23976 Davidia involucrata HOM05D002553 ORTHO05D002767 1.2e-111 407.1 249 75.9
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 2.0e-111 406.4 249 75.5
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 2.6e-111 406.0 249 74.7
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 3.4e-111 405.6 249 74.3
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 4.4e-111 405.2 249 74.3
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 5.8e-111 404.8 249 74.7
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 9.9e-111 404.1 247 74.9
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 2.2e-110 402.9 254 74.0
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 2.2e-110 402.9 249 74.7
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 6.4e-110 401.4 249 74.7
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 8.4e-110 401.0 249 74.7
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.1e-109 400.6 248 75.0
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 3.2e-109 399.1 249 73.9
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 7.1e-109 397.9 249 74.7
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 1.6e-108 396.7 250 76.4
vmacro19641 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 2.1e-108 396.4 249 75.9
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 4.6e-108 395.2 249 72.7
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 7.8e-108 394.4 249 73.5
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 1.3e-107 393.7 249 72.3
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 3.0e-107 392.5 249 70.7
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 5.1e-107 391.7 249 72.7
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 6.6e-107 391.3 249 71.5
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 8.6e-107 391.0 249 71.1
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 1.9e-106 389.8 249 73.5
AUR62000869 Chenopodium quinoa HOM05D002553 ORTHO05D002767 2.5e-106 389.4 249 71.1
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 2.5e-106 389.4 247 72.5
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 3.3e-106 389.0 249 73.1
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 4.3e-106 388.7 249 71.1
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 4.3e-106 388.7 249 71.1
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 9.6e-106 387.5 249 72.7
BolC1t05708H Brassica oleracea HOM05D002553 ORTHO05D002767 1.2e-105 387.1 248 71.4
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.2e-105 387.1 249 70.3
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 1.6e-105 386.7 247 72.5
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 2.1e-105 386.3 249 73.5
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 4.7e-105 385.2 250 74.4
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 4.7e-105 385.2 249 73.5
Solyc01g098700.4 Solanum lycopersicum HOM05D002553 ORTHO05D002767 4.7e-105 385.2 250 70.8
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 6.2e-105 384.8 250 71.6
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 8.1e-105 384.4 249 72.7
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 8.1e-105 384.4 270 67.0
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 1.4e-104 383.6 251 70.1
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 1.8e-104 383.3 249 71.5
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.8e-104 383.3 249 70.3
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 3.1e-104 382.5 249 72.7
AUR62005107 Chenopodium quinoa HOM05D002553 ORTHO05D002767 3.1e-104 382.5 249 70.3
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 3.1e-104 382.5 248 70.2
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 5.2e-104 381.7 249 69.9
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 6.8e-104 381.3 248 70.2
PGSC0003DMG401028577 Solanum tuberosum HOM05D002553 ORTHO05D002767 6.8e-104 381.3 250 70.4
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 8.9e-104 380.9 249 69.1
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 1.2e-103 380.6 249 72.3
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 1.2e-103 380.6 249 72.3
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.5e-103 380.2 247 71.7
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 2.0e-103 379.8 248 71.0
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 2.6e-103 379.4 249 71.9
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 2.6e-103 379.4 249 71.9
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 2.6e-103 379.4 250 69.6
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 3.4e-103 379.0 249 69.5
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 4.4e-103 378.6 249 71.5
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 4.4e-103 378.6 249 69.9
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 5.8e-103 378.3 248 69.8
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 5.8e-103 378.3 249 69.5
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 1.3e-102 377.1 252 69.0
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 2.2e-102 376.3 249 68.3
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 2.9e-102 375.9 251 70.5
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 3.8e-102 375.6 248 69.4
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 4.9e-102 375.2 247 69.6
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 1.1e-101 374.0 248 69.0
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 2.4e-101 372.9 250 69.2
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 2.4e-101 372.9 270 65.9
HanXRQChr02g0037091 Helianthus annuus HOM05D002553 ORTHO05D002767 4.2e-101 372.1 250 70.0
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 1.2e-100 370.5 249 69.5
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.6e-100 370.2 248 68.1
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 3.5e-100 369.0 250 68.4
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.3e-99 366.3 256 66.8
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 1.5e-98 363.6 248 69.4
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 2.5e-98 362.8 249 67.1
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 5.6e-98 361.7 258 65.9
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 1.3e-97 360.5 251 64.9
MD12G1223700 Malus domestica HOM05D002553 ORTHO05D002767 2.8e-97 359.4 296 59.8
BcaC04g23681 Brassica carinata HOM05D002553 ORTHO05D002767 2.0e-95 353.2 249 65.5
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 2.0e-95 353.2 353 52.4
BcaB04g21368 Brassica carinata HOM05D002553 ORTHO05D002767 2.9e-94 349.4 232 69.4
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 2.4e-93 346.3 235 66.8
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 3.0e-91 339.3 223 70.0
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 8.7e-91 337.8 250 64.0
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 8.7e-91 337.8 250 64.0
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.1e-90 337.4 247 64.0
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 1.5e-90 337.0 250 61.6
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 1.5e-90 337.0 265 61.5
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 9.6e-90 334.3 275 58.2
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 3.6e-89 332.4 249 63.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.5e-87 325.5 214 68.7
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 7.6e-87 324.7 251 65.3
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 6.4e-86 321.6 249 60.6
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 3.3e-82 309.3 206 68.9
Gohir.A13G107100 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.0e-80 302.4 194 69.6
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 6.7e-75 285.0 250 56.0
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.6e-73 280.4 249 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 1.1e-72 277.7 233 57.1
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.1e-72 277.7 249 55.8
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.4e-72 277.3 249 56.6
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.4e-69 267.3 249 52.2
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.6e-68 263.8 253 50.2
BcaC04g23682 Brassica carinata HOM05D002553 ORTHO05D002767 5.9e-63 245.4 179 64.8
TPR.G3038 Trifolium pratense HOM05D002553 ORTHO05D002767 7.2e-61 238.4 175 66.3
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 9.7e-58 228.0 200 55.0
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.1e-56 223.0 249 48.6
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.1e-56 223.0 249 48.6
Cre10.g458050 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 3.7e-49 199.5 238 44.5
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 6.3e-49 198.7 144 66.7
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.4e-48 197.6 236 46.6
HPP92_001399 Vanilla planifolia HOM05D002553 ORTHO05D002767 2.0e-31 140.6 134 50.7
VMungo0251G1212 Vigna mungo HOM05D002553 ORTHO05D011906 5.5e-29 132.5 111 63.1
TAR636G3242 Trochodendron aralioides HOM05D002553 ORTHO05D002767 8.0e-28 128.6 91 64.8
CBR_g26142 Chara braunii HOM05D002553 ORTHO05D002767 2.7e-23 113.6 117 50.4
Oeu012095.1 Olea europaea HOM05D002553 ORTHO05D002767 3.5e-23 113.2 73 65.8
Oeu004302.1 Olea europaea HOM05D002553 ORTHO05D002767 1.1e-21 108.2 75 66.7
SEGI_02207 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 2.5e-21 107.1 77 61.0
Os03g0359100 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 6.8e-19 99.0 54 85.2
MCO02G411 Micromonas commoda HOM05D002553 ORTHO05D002767 9.8e-18 95.1 105 46.7
Medtr8g036730 Medicago truncatula HOM05D002553 ORTHO05D002767 1.3e-17 94.7 77 62.3
TPR.G3085 Trifolium pratense HOM05D002553 ORTHO05D002767 2.4e-16 90.5 56 69.6
Oeu013073.1 Olea europaea HOM05D002553 ORTHO05D002767 9.2e-16 88.6 63 63.5
CSS0036549 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.0e-14 82.8 78 48.7
Oeu013074.1 Olea europaea HOM05D002553 ORTHO05D002767 9.8e-10 68.6 72 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1526 Anthoceros agrestis HOM05D023760 ORTHO05D023480 3.7e-09 66.6 296 25.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.1e-08 65.1 45 64.4
CBR_g26141 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-08 63.9 71 45.1
Haze_21959 Corylus avellana HOM05D002553 ORTHO05D002767 4.6e-07 59.7 38 73.7
AagrBONN_evm.TU.Sc2ySwM_117.1533 Anthoceros agrestis HOM05D023760 ORTHO05D023480 7.8e-07 58.9 308 23.7
AagrBONN_evm.TU.Sc2ySwM_117.1543 Anthoceros agrestis HOM05D023760 ORTHO05D023480 1.3e-06 58.2 306 23.5


User provided reference genes

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