Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 1.9e-164 582.4 282 100.0
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 9.6e-153 543.5 281 91.8
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 4.0e-135 485.0 291 81.1
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 1.1e-129 466.8 282 78.4
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.5e-129 466.5 282 80.1
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 3.1e-127 458.8 283 78.8
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 1.5e-126 456.4 259 83.0
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 2.0e-126 456.1 283 78.4
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 2.9e-125 452.2 259 81.9
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 5.9e-118 427.9 255 78.8
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 4.2e-116 421.8 254 76.0
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 6.3e-112 407.9 258 76.0
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 2.8e-104 382.5 254 69.7
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 7.0e-103 377.9 255 69.0
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 6.7e-98 361.3 250 66.4
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 6.7e-98 361.3 255 64.3
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.7e-98 361.3 251 66.1
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.0e-97 359.8 245 68.2
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.6e-97 359.4 251 65.7
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.6e-97 359.4 255 65.9
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.4e-97 358.6 251 65.3
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.7e-96 355.5 251 64.9
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 4.5e-94 348.6 254 64.2
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.7e-93 346.7 254 63.8
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.6e-91 340.1 252 63.1
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 1.6e-91 340.1 254 61.4
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 3.6e-91 339.0 254 62.2
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 4.7e-91 338.6 256 64.1
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 5.2e-90 335.1 273 59.7
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.2e-89 334.0 250 61.6
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 2.6e-89 332.8 259 59.1
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 5.7e-89 331.6 254 59.4
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 7.5e-89 331.3 269 57.6
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.7e-88 330.1 273 59.0
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.7e-88 330.1 254 61.8
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.7e-88 328.9 253 59.3
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 3.7e-88 328.9 257 58.0
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 6.3e-88 328.2 254 61.0
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 3.1e-87 325.9 234 66.2
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 2.0e-86 323.2 247 60.3
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 2.0e-86 323.2 258 59.3
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 7.7e-86 321.2 261 56.7
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 7.7e-86 321.2 282 56.0
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 1.0e-85 320.9 254 58.7
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 3.8e-85 318.9 261 56.3
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 8.5e-85 317.8 250 58.8
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.1e-83 313.2 254 57.5
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 2.7e-83 312.8 250 57.6
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 6.1e-83 311.6 254 57.5
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 2.3e-82 309.7 254 57.1
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 5.2e-82 308.5 254 57.5
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 2.6e-81 306.2 253 55.3
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 9.8e-81 304.3 255 56.1
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 3.7e-80 302.4 268 54.5
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 4.9e-80 302.0 256 55.9
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 8.3e-80 301.2 253 56.1
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 3.1e-79 299.3 279 53.4
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 9.1e-79 297.7 274 53.6
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 9.1e-79 297.7 254 56.7
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 1.2e-78 297.4 252 57.5
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.7e-78 296.2 265 55.5
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 5.9e-78 295.0 254 56.3
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 2.9e-77 292.7 254 55.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.8e-77 292.4 254 53.9
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 5.0e-77 292.0 254 55.9
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 1.1e-76 290.8 254 55.5
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 2.5e-76 289.7 251 53.0
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.5e-76 289.7 239 56.1
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.3e-76 289.3 266 54.1
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 5.6e-76 288.5 251 53.4
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 9.5e-76 287.7 254 52.0
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 2.1e-75 286.6 247 54.3
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 2.8e-75 286.2 258 53.5
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 2.8e-75 286.2 252 54.8
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 4.7e-75 285.4 256 53.5
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 6.1e-75 285.0 261 54.8
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 8.0e-75 284.6 255 55.3
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 2.3e-74 283.1 252 53.6
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 5.2e-74 282.0 238 56.7
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 5.7e-73 278.5 242 55.8
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.2e-72 276.6 241 56.8
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 3.2e-71 272.7 254 52.8
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 7.0e-71 271.6 255 50.6
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 9.2e-71 271.2 242 55.0
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 9.2e-71 271.2 243 55.1
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 1.3e-69 267.3 251 47.8
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 2.3e-69 266.5 250 48.8
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 5.0e-69 265.4 242 54.5
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 2.8e-67 259.6 260 48.1
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.8e-67 259.6 216 57.4
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 6.2e-67 258.5 256 50.0
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 6.8e-66 255.0 237 52.7
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 5.8e-65 251.9 257 49.8
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 9.8e-65 251.1 255 49.8
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 5.0e-61 238.8 178 60.1
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 1.1e-60 237.7 138 75.4
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 4.4e-57 225.7 252 43.3
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.7e-56 223.8 262 44.7
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 2.2e-56 223.4 196 51.5
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 1.4e-50 204.1 209 49.8
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 4.1e-47 192.6 170 54.1
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.0e-46 188.7 245 39.6
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 8.6e-45 184.9 173 52.0
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 8.9e-42 174.9 234 41.5
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 1.7e-40 170.6 137 60.6
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.8e-35 153.3 196 43.4
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 3.6e-35 152.9 242 39.7
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.8e-34 150.6 247 36.4
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-32 144.4 243 38.3
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 2.2e-32 143.7 219 36.5
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 3.8e-32 142.9 198 36.9
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 4.9e-32 142.5 227 34.8
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 2.5e-28 130.2 76 73.7
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 3.3e-28 129.8 120 55.0
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 9.6e-28 128.3 232 32.3
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 4.8e-27 125.9 177 40.1
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 3.4e-25 119.8 237 32.9
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 2.7e-22 110.2 132 47.7
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 7.9e-22 108.6 96 55.2
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-18 97.1 106 49.1
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-17 94.0 108 47.2
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 7.9e-14 82.0 57 61.4
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 6.7e-13 79.0 130 34.6
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 6.9e-10 68.9 299 21.7
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 2.0e-09 67.4 269 24.2
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 2.2e-08 63.9 257 25.3
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.9e-08 63.5 261 25.7
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 2.9e-08 63.5 56 53.6
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 8.4e-08 62.0 255 25.1
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 1.1e-07 61.6 259 23.9
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 1.1e-07 61.6 270 25.6
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 2.5e-07 60.5 279 22.6
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 3.2e-07 60.1 267 24.7
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 3.2e-07 60.1 231 23.8
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 9.3e-07 58.5 282 22.7
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 1.6e-06 57.8 271 23.6
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 2.1e-06 57.4 278 20.9
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 2.7e-06 57.0 113 31.0
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 3.5e-06 56.6 273 23.8
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 6.1e-06 55.8 269 23.4


User provided reference genes

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