Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.9e-149 530.8 258 100.0
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 7.0e-126 454.1 254 87.4
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 1.6e-122 443.0 258 85.3
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 1.9e-115 419.5 262 79.0
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 3.7e-111 405.2 264 77.3
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 3.5e-109 398.7 263 76.8
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.5e-107 392.5 267 76.8
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 2.1e-106 389.4 220 85.5
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.8e-106 389.0 259 74.1
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 2.3e-105 386.0 268 72.4
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 4.0e-105 385.2 238 79.8
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 8.9e-105 384.0 236 78.4
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 2.6e-104 382.5 269 72.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.4e-104 381.7 252 74.6
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 5.8e-104 381.3 212 85.4
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 5.8e-104 381.3 211 85.3
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 9.8e-104 380.6 264 74.2
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.3e-103 380.2 217 83.4
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.7e-103 379.8 261 74.3
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 3.7e-103 378.6 254 74.0
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 3.7e-103 378.6 239 77.8
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.1e-102 377.1 263 73.0
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 1.1e-102 377.1 268 74.3
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.1e-102 377.1 239 77.8
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 1.1e-102 377.1 262 74.4
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.4e-102 376.7 262 74.4
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 5.4e-102 374.8 240 76.2
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 5.4e-102 374.8 215 83.3
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 7.0e-102 374.4 240 76.2
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 9.2e-102 374.0 233 77.7
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 6.0e-101 371.3 262 73.3
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 6.0e-101 371.3 229 79.0
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 7.8e-101 370.9 215 82.3
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.3e-100 369.4 212 82.5
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 3.0e-100 369.0 266 71.4
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.0e-100 369.0 247 74.5
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 5.0e-100 368.2 222 79.7
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 8.6e-100 367.5 216 80.6
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 2.5e-99 365.9 231 77.5
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.3e-99 365.5 212 81.6
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 5.6e-99 364.8 203 84.2
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 7.3e-99 364.4 242 74.0
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.6e-98 363.2 247 75.3
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 1.6e-98 363.2 265 70.2
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 6.2e-98 361.3 206 82.0
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.4e-97 360.1 286 65.4
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 5.2e-97 358.2 239 72.0
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 5.2e-97 358.2 239 73.2
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 6.8e-97 357.8 247 68.8
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 1.5e-96 356.7 215 80.0
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 1.5e-96 356.7 225 76.4
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 2.0e-96 356.3 248 69.8
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 2.6e-96 355.9 247 69.2
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 3.4e-96 355.5 215 79.5
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 7.5e-96 354.4 256 68.4
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 7.5e-96 354.4 213 80.3
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 9.8e-96 354.0 243 72.8
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 4.9e-95 351.7 249 68.3
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 4.9e-95 351.7 249 68.3
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 6.4e-95 351.3 247 68.4
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 8.3e-95 350.9 255 68.2
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 8.3e-95 350.9 247 68.4
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.1e-94 350.5 250 67.6
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.4e-94 350.1 212 79.7
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.9e-94 349.7 279 66.7
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 2.4e-94 349.4 249 67.5
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 3.2e-94 349.0 212 77.8
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 5.4e-94 348.2 245 69.4
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.0e-92 344.0 237 71.7
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 1.7e-92 343.2 206 78.6
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.1e-91 340.5 226 73.0
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 3.6e-90 335.5 243 67.9
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.4e-89 333.6 228 72.8
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 6.8e-89 331.3 211 72.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.2e-88 330.5 176 87.5
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.5e-88 330.1 260 67.7
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 3.4e-88 328.9 248 70.2
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 2.4e-86 322.8 213 74.6
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 2.4e-86 322.8 248 63.7
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.4e-86 322.8 222 73.0
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 7.1e-86 321.2 214 74.8
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.2e-85 320.5 249 66.7
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.7e-85 319.3 268 63.8
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 8.6e-84 314.3 313 56.5
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 8.1e-82 307.8 183 78.7
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.4e-81 306.2 227 70.9
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 5.2e-81 305.1 243 65.8
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 5.2e-81 305.1 227 67.0
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.2e-80 303.9 169 82.8
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 1.2e-80 303.9 251 68.9
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 2.6e-80 302.8 216 71.8
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 3.8e-79 298.9 188 79.8
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 7.1e-78 294.7 341 51.6
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.6e-77 293.5 186 78.5
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 1.5e-72 276.9 189 77.2
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 1.5e-72 276.9 201 71.6
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 2.2e-71 273.1 224 59.4
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 8.4e-71 271.2 149 86.6
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 4.6e-69 265.4 190 70.5
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 1.3e-68 263.8 194 66.0
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 7.3e-67 258.1 172 76.2
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 5.3e-65 251.9 196 59.2
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 2.1e-58 229.9 210 55.2
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 2.1e-58 229.9 120 91.7
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 5.3e-57 225.3 141 78.7
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 9.0e-57 224.6 150 74.0
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 7.1e-54 214.9 179 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.1e-51 207.6 162 61.1
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 6.3e-50 201.8 179 52.0
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.3e-44 184.1 212 49.1
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.3e-41 172.2 181 49.7
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.7e-37 159.8 81 91.4
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.0e-36 156.4 81 90.1
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 4.1e-33 146.0 76 89.5
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 2.6e-32 143.3 118 61.0
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 1.4e-28 131.0 178 40.4
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.0e-28 129.8 69 84.1
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.6e-27 126.7 116 44.0
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 1.6e-24 117.5 133 52.6
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.8e-23 112.8 58 89.7
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 2.1e-21 107.1 65 78.5
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 3.0e-20 103.2 66 71.2
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 6.3e-18 95.5 51 88.2
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-15 87.8 64 67.2
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.7e-15 87.4 45 86.7
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 4.2e-14 82.8 44 81.8
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 5.5e-14 82.4 78 51.3


User provided reference genes

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