Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 1.2e-92 343.2 171 100.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.1e-66 256.9 158 81.0
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.1e-61 240.4 159 74.8
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.4e-61 240.0 165 72.1
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 9.8e-60 233.8 164 72.6
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.2e-59 232.6 163 70.6
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 8.3e-51 204.1 127 77.2
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 5.4e-50 201.4 166 62.0
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.3e-47 192.2 165 62.4
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.6e-46 189.9 165 61.8
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 6.8e-45 184.5 140 62.9
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 4.4e-44 181.8 143 60.1
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.8e-43 178.7 144 61.8
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.6e-38 163.3 147 55.8
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.1e-37 160.6 139 56.1
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 9.0e-37 157.5 135 52.6
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-36 156.8 135 51.9
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-36 156.4 135 52.6
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.6e-36 156.0 154 49.4
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.9e-34 149.8 134 50.7
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 5.4e-34 148.3 145 54.5
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 7.1e-34 147.9 139 49.6
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.6e-33 146.7 103 61.2
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.6e-33 146.7 133 50.4
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 2.7e-33 146.0 139 50.4
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 3.5e-33 145.6 118 55.9
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 6.0e-33 144.8 169 45.6
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 7.8e-33 144.4 146 52.1
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.3e-32 143.7 140 54.3
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-32 143.7 142 52.1
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-32 143.7 154 50.0
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.0e-32 142.5 107 58.9
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 6.6e-32 141.4 157 43.9
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.7e-32 141.0 132 54.5
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 1.1e-31 140.6 113 55.8
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.1e-31 140.6 130 50.8
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.9e-31 139.8 103 59.2
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.3e-31 139.0 134 50.0
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 3.3e-31 139.0 117 52.1
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 5.6e-31 138.3 106 57.5
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 5.6e-31 138.3 105 56.2
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 5.6e-31 138.3 151 44.4
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 7.3e-31 137.9 145 44.8
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 9.6e-31 137.5 111 54.1
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 9.6e-31 137.5 145 44.8
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.3e-30 137.1 122 51.6
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-30 137.1 145 44.8
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.6e-30 136.7 110 53.6
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.1e-30 136.3 118 51.7
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.8e-30 136.0 114 50.0
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 2.8e-30 136.0 161 42.9
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 3.6e-30 135.6 118 52.5
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 4.8e-30 135.2 117 53.8
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.8e-30 135.2 107 55.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 4.8e-30 135.2 129 48.1
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 6.2e-30 134.8 107 56.1
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 6.2e-30 134.8 107 55.1
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 8.1e-30 134.4 174 43.7
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-29 134.0 155 45.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.1e-29 134.0 165 43.0
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.1e-29 134.0 107 54.2
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.1e-29 134.0 198 40.9
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.1e-29 134.0 112 54.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.4e-29 133.7 155 45.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.4e-29 133.7 108 53.7
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.4e-29 133.7 121 47.9
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.4e-29 132.9 153 45.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.1e-29 132.5 155 44.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.0e-29 132.1 141 46.8
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 6.9e-29 131.3 119 52.1
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 6.9e-29 131.3 123 49.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 9.0e-29 131.0 101 56.4
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 9.0e-29 131.0 117 48.7
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.2e-28 130.6 106 54.7
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.2e-28 130.6 107 50.5
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.2e-28 130.6 119 47.9
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.5e-28 130.2 133 49.6
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.5e-28 130.2 158 43.0
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.0e-28 129.8 105 53.3
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 2.6e-28 129.4 155 40.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.4e-28 129.0 119 50.4
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 4.5e-28 128.6 118 47.5
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 5.8e-28 128.3 124 48.4
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 7.6e-28 127.9 107 52.3
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 7.6e-28 127.9 165 39.4
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 7.6e-28 127.9 107 53.3
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.7e-27 126.7 130 46.9
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.7e-27 126.7 165 41.2
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.9e-27 125.9 123 49.6
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.4e-27 124.8 127 46.5
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 6.4e-27 124.8 144 41.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.4e-27 124.8 120 48.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 6.4e-27 124.8 106 49.1
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 8.4e-27 124.4 157 38.9
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 8.4e-27 124.4 133 43.6
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 8.4e-27 124.4 106 50.9
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-26 124.0 156 46.2
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-26 124.0 87 59.8
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 1.9e-26 123.2 114 48.2
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 4.2e-26 122.1 114 50.9
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.2e-26 122.1 95 55.8
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 9.3e-26 120.9 109 50.5
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.2e-25 120.6 96 53.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.2e-25 120.6 96 53.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.2e-25 120.6 96 53.1
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.2e-25 120.6 97 51.5
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.6e-25 120.2 96 53.1
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.7e-25 119.4 121 45.5
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.7e-25 119.4 124 45.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.7e-25 119.4 111 45.9
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 2.7e-25 119.4 120 47.5
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.5e-25 119.0 135 43.7
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 3.5e-25 119.0 112 50.0
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 4.6e-25 118.6 96 52.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 4.6e-25 118.6 109 49.5
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.9e-25 117.9 131 45.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 1.0e-24 117.5 107 49.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.0e-24 117.5 86 58.1
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.0e-24 117.5 120 47.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.0e-24 117.5 120 47.5
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.3e-24 117.1 66 78.8
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.3e-24 116.3 93 51.6
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.0e-24 115.9 113 45.1
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.9e-24 115.5 113 48.7
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.1e-24 115.2 141 43.3
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.1e-24 115.2 85 58.8
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 5.1e-24 115.2 103 52.4
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.7e-24 114.8 114 45.6
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 6.7e-24 114.8 123 43.9
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 8.7e-24 114.4 105 49.5
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.1e-23 114.0 114 47.4
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.1e-23 114.0 79 62.0
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.5e-23 113.6 99 49.5
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.5e-23 112.8 120 45.0
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.5e-23 112.8 119 44.5
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.3e-23 112.1 109 45.9
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 5.6e-23 111.7 100 47.0
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 5.6e-23 111.7 88 53.4
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 9.6e-23 110.9 101 48.5
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 9.6e-23 110.9 110 43.6
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.3e-22 110.5 100 49.0
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-22 110.5 103 48.5
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 2.8e-22 109.4 86 53.5
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.8e-22 109.4 100 48.0
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 4.8e-22 108.6 131 42.0
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 4.8e-22 108.6 100 48.0
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 4.8e-22 108.6 100 48.0
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 4.8e-22 108.6 100 48.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 4.8e-22 108.6 100 48.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.8e-22 108.6 107 45.8
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 6.2e-22 108.2 114 41.2
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 8.1e-22 107.8 106 47.2
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 1.4e-21 107.1 120 41.7
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.8e-21 106.7 120 40.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.4e-21 106.3 117 44.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 9.0e-21 104.4 99 46.5
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.4e-20 102.4 112 42.0
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 5.8e-20 101.7 118 40.7
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 7.6e-20 101.3 93 48.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.6e-20 101.3 117 40.2
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.0e-19 100.9 122 40.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.3e-19 100.5 107 44.9
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 4.9e-19 98.6 121 43.8
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 6.5e-19 98.2 99 47.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.1e-18 97.4 93 44.1
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 1.2e-17 94.0 97 43.3
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.2e-17 94.0 92 42.4
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.6e-17 93.6 123 39.0
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.6e-17 93.6 120 38.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 1.6e-17 93.6 100 46.0
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 7.4e-15 84.7 83 47.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.3e-14 84.0 130 33.8
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.8e-14 82.0 122 36.9
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-11 73.9 55 56.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.2e-10 69.3 122 34.4
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.9e-09 64.7 45 55.6
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 7.9e-09 64.7 111 35.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 5.1e-08 62.0 72 43.1
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 5.7e-07 58.5 125 32.0
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 7.4e-07 58.2 116 31.9
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.3e-06 57.4 82 32.9
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 1.3e-06 57.4 125 31.2
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 6.3e-06 55.1 71 40.8
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 6.3e-06 55.1 71 40.8


User provided reference genes

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