Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 6.7e-255 884.0 632 100.0
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 1.5e-238 829.7 632 95.1
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 2.3e-202 709.5 633 87.0
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 3.4e-174 615.9 633 80.9
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 2.4e-172 609.8 654 78.6
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 1.0e-162 577.8 652 73.3
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 4.9e-157 558.9 671 74.2
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 1.8e-151 540.4 637 75.7
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 4.3e-145 519.2 669 74.1
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 2.4e-143 513.5 666 74.0
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 2.5e-140 503.4 652 72.2
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 1.7e-125 454.1 647 71.3
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 4.2e-124 449.5 647 71.3
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 9.4e-124 448.4 506 65.8
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 2.1e-123 447.2 647 70.0
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 3.7e-120 436.4 655 68.9
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 3.8e-117 426.4 647 68.6
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 3.6e-115 419.9 658 64.9
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 2.2e-112 410.6 655 66.7
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 2.5e-108 397.1 649 64.9
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 3.2e-108 396.7 655 62.0
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 3.2e-108 396.7 647 66.5
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 9.4e-108 395.2 654 65.7
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 5.2e-106 389.4 649 64.1
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 5.7e-105 386.0 654 65.1
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 3.7e-104 383.3 655 64.9
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 8.3e-104 382.1 657 63.9
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 5.4e-103 379.4 654 65.1
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 5.9e-102 375.9 664 63.4
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 2.3e-101 374.0 656 54.9
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.1e-100 371.7 653 63.4
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 5.5e-100 369.4 653 62.8
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 2.8e-99 367.1 630 65.2
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 5.2e-98 362.8 658 62.8
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 8.9e-98 362.1 676 52.5
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 8.9e-98 362.1 641 63.5
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 8.3e-96 355.5 652 62.7
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 1.1e-95 355.1 647 62.8
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 7.0e-95 352.4 648 62.7
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 4.5e-94 349.7 645 62.6
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 2.3e-93 347.4 633 63.3
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 5.6e-92 342.8 651 63.4
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.2e-91 341.7 656 63.1
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 2.1e-91 340.9 636 54.4
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 2.8e-91 340.5 659 62.5
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 3.6e-91 340.1 651 63.3
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 3.6e-91 340.1 635 58.3
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 1.4e-90 338.2 660 47.1
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 3.0e-90 337.0 665 46.6
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 4.0e-90 336.7 652 61.7
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 3.4e-89 333.6 635 42.0
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 4.4e-89 333.2 642 61.5
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 7.5e-89 332.4 650 61.7
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 1.3e-85 321.6 681 37.9
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 1.5e-84 318.2 652 62.0
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 9.5e-84 315.5 643 50.7
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 1.6e-83 314.7 655 59.8
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 3.1e-82 310.5 654 60.6
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 1.2e-81 308.5 632 58.4
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.5e-81 308.1 657 60.6
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 2.0e-81 307.8 658 50.8
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 2.0e-81 307.8 643 60.3
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.7e-80 304.7 658 60.0
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 4.9e-80 303.1 642 60.9
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 6.4e-80 302.8 644 61.0
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 8.3e-80 302.4 639 61.2
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 1.9e-79 301.2 642 56.5
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 5.4e-79 299.7 656 55.2
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.2e-78 298.5 654 60.1
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.7e-77 294.7 644 61.0
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 1.5e-76 291.6 627 62.5
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 1.2e-75 288.5 546 65.0
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 2.8e-75 287.3 662 48.9
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 1.4e-74 285.0 647 56.7
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 4.0e-74 283.5 630 60.3
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 2.6e-73 280.8 641 50.5
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 7.5e-73 279.3 653 53.3
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 2.2e-72 277.7 643 60.5
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 3.7e-72 276.9 644 52.8
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 1.4e-71 275.0 644 58.1
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 5.4e-71 273.1 669 58.0
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 7.1e-71 272.7 630 45.7
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 4.6e-70 270.0 666 57.8
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 6.6e-69 266.2 661 58.5
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 1.1e-68 265.4 630 59.5
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.5e-68 265.0 681 51.0
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 4.3e-68 263.5 633 46.3
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 2.8e-67 260.8 644 59.2
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 5.2e-66 256.5 339 47.2
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 2.0e-65 254.6 662 52.0
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.7e-64 251.5 649 51.8
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.4e-63 248.4 676 56.5
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.2e-62 245.4 676 57.0
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.2e-62 245.4 676 56.4
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 2.7e-62 244.2 640 56.9
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 8.7e-61 239.2 644 56.4
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 4.3e-60 236.9 645 56.0
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 1.2e-59 235.3 653 55.1
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 1.4e-55 221.9 633 46.9
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 3.1e-50 204.1 370 62.2
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 3.8e-48 197.2 643 49.1
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.9e-45 187.2 520 50.6
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 3.9e-45 187.2 487 51.7
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 7.4e-44 183.0 487 50.9
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 2.0e-41 174.9 273 41.8
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 2.0e-41 174.9 639 40.8
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 2.5e-39 167.9 494 47.4
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 7.1e-39 166.4 203 80.3
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 6.0e-38 163.3 516 32.0
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 2.2e-32 144.8 246 39.8
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 1.1e-31 142.5 361 35.7
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 4.6e-30 137.1 199 71.9
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.0e-29 136.0 474 47.0
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 3.0e-29 134.4 177 80.8
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 6.3e-27 126.7 278 39.2
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.1e-26 125.9 624 36.5
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 1.8e-26 125.2 222 38.7
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 5.3e-26 123.6 435 49.7
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 2.1e-22 111.7 231 47.6
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.1e-20 105.9 644 32.9
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 6.9e-18 96.7 64 65.6
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 9.7e-12 76.3 56 66.1
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.1e-07 62.8 53 47.2
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-07 62.4 46 52.2
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 1.9e-07 62.0 184 23.4
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.2e-07 61.2 46 52.2
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 5.5e-07 60.5 46 52.2
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.5e-07 60.5 46 52.2
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 9.4e-07 59.7 74 50.0
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 1.2e-06 59.3 184 22.8
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 1.2e-06 59.3 49 55.1
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.6e-06 58.9 49 53.1
Gohir.D13G179900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.6e-06 58.9 49 53.1
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.6e-06 58.9 49 53.1
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 1.6e-06 58.9 49 53.1
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 2.1e-06 58.5 55 47.3
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 2.1e-06 58.5 47 48.9
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 2.7e-06 58.2 203 22.2
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 2.7e-06 58.2 52 42.3
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 2.7e-06 58.2 47 46.8
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.7e-06 58.2 46 52.2
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.7e-06 58.2 46 50.0
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 2.7e-06 58.2 52 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 3.6e-06 57.8 194 24.2
CANSAT54G2339 Cannabis sativa HOM05D001137 ORTHO05D001967 3.6e-06 57.8 49 51.0
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 4.7e-06 57.4 46 52.2
FvH4_6g06301 Fragaria vesca HOM05D001137 ORTHO05D001967 4.7e-06 57.4 49 51.0
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 4.7e-06 57.4 54 46.3
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 4.7e-06 57.4 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 4.7e-06 57.4 46 47.8
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 4.7e-06 57.4 47 53.2
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 6.1e-06 57.0 46 45.7
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 6.1e-06 57.0 54 46.3
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 6.1e-06 57.0 47 46.8
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 6.1e-06 57.0 48 47.9
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 6.1e-06 57.0 47 55.3
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 6.1e-06 57.0 49 51.0
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 6.1e-06 57.0 47 55.3
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.1e-06 57.0 46 47.8
CAN.G1652.17 Capsicum annuum HOM05D001137 ORTHO05D001967 8.0e-06 56.6 47 46.8
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 8.0e-06 56.6 49 51.0
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 8.0e-06 56.6 43 53.5
Medtr4g071265 Medicago truncatula HOM05D006340 ORTHO05D007568 8.0e-06 56.6 44 65.9
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 8.0e-06 56.6 43 51.2
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 8.0e-06 56.6 49 51.0


User provided reference genes

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