Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 3.2e-43 178.3 111 100.0
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 7.6e-37 157.1 113 78.8
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.9e-30 134.0 119 81.5
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 6.9e-30 134.0 119 82.4
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 8.7e-25 117.1 120 70.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.1e-23 112.5 117 55.6
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 6.2e-23 110.9 117 54.7
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 1.4e-22 109.8 90 65.6
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.8e-22 109.4 116 54.3
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.4e-22 109.0 90 65.6
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 2.0e-21 105.9 119 52.1
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 2.2e-20 102.4 112 54.5
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.2e-19 98.2 112 54.5
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 9.3e-19 97.1 86 64.0
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.2e-18 96.7 83 65.1
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 6.0e-18 94.4 110 50.9
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 7.9e-18 94.0 82 62.2
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 4.3e-16 88.2 65 67.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 5.7e-16 87.8 90 55.6
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 8.2e-15 84.0 70 62.9
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 3.1e-14 82.0 115 46.1
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 4.1e-14 81.6 75 56.0
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 5.3e-14 81.3 61 65.6
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 6.9e-14 80.9 91 53.8
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 6.9e-14 80.9 89 49.4
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 1.2e-13 80.1 115 47.8
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.5e-13 79.7 85 50.6
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.5e-13 79.7 57 70.2
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 2.0e-13 79.3 93 49.5
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 2.0e-13 79.3 83 54.2
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 5.9e-13 77.8 60 63.3
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 7.6e-13 77.4 77 53.2
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.9e-12 75.5 54 63.0
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.8e-12 75.1 93 48.4
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 5.0e-12 74.7 83 54.2
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 5.0e-12 74.7 93 48.4
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.2e-11 72.0 48 70.8
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.5e-11 71.2 48 70.8
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 7.2e-11 70.9 49 67.3
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 9.4e-11 70.5 71 54.9
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.2e-10 70.1 48 68.8
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 2.1e-10 69.3 76 59.2
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 2.1e-10 69.3 48 64.6
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 2.7e-10 68.9 70 52.9
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.6e-10 68.6 44 75.0
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.6e-10 68.6 44 75.0
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.6e-10 68.6 44 75.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 6.1e-10 67.8 75 49.3
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 7.9e-10 67.4 46 63.0
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 7.9e-10 67.4 47 66.0
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.4e-09 66.6 80 52.5
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.4e-09 66.6 44 72.7
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 1.4e-09 66.6 53 60.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 2.3e-09 65.9 53 60.4
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 3.0e-09 65.5 48 66.7
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 3.9e-09 65.1 54 55.6
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 3.9e-09 65.1 48 64.6
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 3.9e-09 65.1 70 54.3
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 6.7e-09 64.3 50 64.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.1e-08 63.5 44 72.7
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.1e-08 63.5 50 62.0
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.5e-08 63.2 46 63.0
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 1.9e-08 62.8 80 45.0
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.5e-08 62.4 47 66.0
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 4.3e-08 61.6 73 49.3
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 4.3e-08 61.6 73 49.3
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.3e-08 61.6 41 70.7
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 4.3e-08 61.6 59 54.2
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.3e-07 60.1 74 51.4
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.3e-07 60.1 74 51.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 3.7e-07 58.5 40 70.0
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 3.7e-07 58.5 55 56.4
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 4.8e-07 58.2 46 60.9
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 6.3e-07 57.8 52 55.8
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 6.3e-07 57.8 48 56.2
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 8.2e-07 57.4 43 58.1
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.1e-06 57.0 74 47.3
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.1e-06 57.0 85 43.5
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-06 57.0 49 57.1
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.1e-06 57.0 85 43.5
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.1e-06 57.0 85 43.5
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.1e-06 57.0 44 65.9
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 4.1e-06 55.1 45 62.2
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.3e-06 54.7 62 48.4
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 5.3e-06 54.7 45 62.2
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 5.3e-06 54.7 39 64.1
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 6.9e-06 54.3 45 60.0
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 6.9e-06 54.3 45 60.0
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 9.1e-06 53.9 45 60.0


User provided reference genes

Program Settings