Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1578.9 824 100.0
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1288.9 828 84.9
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 0.0e+00 1152.1 832 76.2
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 1.5e-294 1016.1 771 72.6
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 2.5e-270 935.6 853 64.1
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 5.1e-247 858.2 836 61.4
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 6.7e-247 857.8 801 64.0
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 3.9e-239 832.0 814 61.3
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 5.2e-223 778.5 823 59.1
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 3.5e-203 712.6 847 53.0
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 7.1e-148 528.9 665 50.7
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 1.3e-133 481.5 614 51.0
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 4.5e-126 456.4 827 40.3
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 5.5e-124 449.5 847 39.6
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 7.4e-121 439.1 854 38.3
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 7.0e-119 432.6 862 37.9
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.1e-113 415.2 808 38.7
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.3e-112 411.8 901 35.4
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 8.2e-112 409.1 805 38.8
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.8e-111 407.9 859 37.5
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 2.0e-110 404.4 862 36.3
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.5e-110 403.7 838 37.8
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.3e-109 401.7 884 35.7
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.3e-109 401.7 856 36.6
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 4.2e-108 396.7 693 42.0
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.2e-107 395.2 843 37.0
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 2.0e-105 387.9 833 37.6
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.3e-101 375.2 831 37.3
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.7e-99 366.7 831 37.3
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 8.0e-99 365.9 796 36.8
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 6.8e-98 362.8 838 35.2
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.8e-95 354.8 859 35.4
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.7e-93 348.2 806 36.7
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.3e-93 347.8 860 35.3
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.4e-89 334.0 884 33.3
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 1.3e-88 332.0 879 33.2
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.4e-87 327.8 879 33.1
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 5.4e-87 326.6 827 34.6
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-86 325.5 781 36.2
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.5e-86 323.9 894 32.4
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 5.0e-85 320.1 800 34.8
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.5e-84 318.5 816 35.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.6e-83 315.1 887 31.9
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.1e-83 314.7 834 33.8
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.0e-82 310.5 889 31.6
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 5.8e-81 306.6 817 33.5
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.8e-81 305.8 898 32.6
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.9e-79 301.6 843 33.0
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.1e-79 300.4 875 32.8
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.7e-78 297.7 927 31.4
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 3.1e-74 284.3 963 30.0
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 4.0e-74 283.9 209 77.0
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 3.2e-71 274.2 930 29.2
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 3.5e-70 270.8 827 30.6
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.8e-70 269.6 968 29.9
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.3e-69 268.9 827 29.5
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 3.0e-69 267.7 837 29.5
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 3.0e-69 267.7 763 32.9
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 5.1e-69 266.9 829 30.5
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.5e-68 265.4 832 31.7
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 5.6e-68 263.5 824 30.6
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.4e-66 258.8 825 30.1
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.2e-65 255.8 823 30.0
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.7e-64 251.9 821 29.5
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.9e-64 251.1 859 30.8
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.4e-63 248.1 853 30.0
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 3.2e-63 247.7 838 31.7
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 7.1e-63 246.5 972 27.6
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 9.2e-63 246.1 854 29.7
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.2e-62 245.7 853 29.9
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.9e-61 240.7 831 30.4
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.1e-60 239.2 840 32.0
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.5e-60 238.8 598 35.1
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.5e-60 238.8 869 30.4
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.5e-60 238.0 810 30.9
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 2.8e-59 234.6 848 28.8
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 5.2e-58 230.3 845 29.1
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 6.8e-58 229.9 839 29.2
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.0e-57 228.4 900 29.8
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.7e-56 225.3 498 36.7
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 1.1e-55 222.6 739 31.3
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 4.2e-55 220.7 504 36.3
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 5.4e-55 220.3 835 28.9
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 9.3e-55 219.5 826 29.1
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.3e-53 214.9 771 29.4
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 6.6e-53 213.4 809 28.8
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 9.6e-52 209.5 639 30.2
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 1.4e-50 205.7 855 29.6
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 2.0e-49 201.8 223 51.6
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.7e-48 198.7 528 34.1
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 1.4e-47 195.7 817 27.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 5.4e-47 193.7 851 29.4
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.1e-46 191.8 641 30.0
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 2.5e-44 184.9 800 29.6
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 1.8e-42 178.7 831 26.6
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 6.9e-42 176.8 889 27.1
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.7e-40 172.2 886 27.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.4e-39 169.1 840 29.2
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 3.2e-39 167.9 927 26.5
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 6.0e-38 163.7 494 33.6
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.0e-37 162.9 815 28.3
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.3e-37 162.5 130 63.1
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 3.3e-36 157.9 456 32.7
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.8e-34 152.1 713 27.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.2e-33 149.4 140 55.0
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 6.0e-30 137.1 645 26.5
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 8.7e-29 133.3 107 65.4
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.9e-28 132.1 167 44.9
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.9e-28 132.1 657 26.0
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.1e-27 128.6 99 67.7
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 4.5e-25 120.9 903 23.9
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 4.2e-23 114.4 460 28.5
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 1.0e-21 109.8 160 41.2
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 9.7e-20 103.2 161 39.1
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.0e-13 83.2 181 39.8
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.0e-13 83.2 91 51.6
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 3.9e-13 81.3 142 33.8
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.5e-12 79.3 116 38.8
VMungo0251G2966 Vigna mungo HOM05D005434 ORTHO05D006412 2.5e-12 78.6 212 34.9
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 3.3e-12 78.2 139 35.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 5.3e-10 70.9 200 25.5
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 2.0e-09 68.9 76 48.7
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 2.2e-08 65.5 93 47.3
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 2.9e-08 65.1 80 45.0
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.8e-08 64.7 490 23.1
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 8.5e-08 63.5 178 24.7
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 5.5e-07 60.8 180 22.8
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.7e-06 58.5 174 30.5
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 4.7e-06 57.8 201 21.9
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 7.9e-06 57.0 118 37.3


User provided reference genes

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