Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.3e-112 409.8 227 100.0
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.9e-106 389.4 229 96.1
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.3e-96 356.7 227 87.7
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 2.8e-86 322.4 232 78.4
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.2e-81 307.0 227 76.7
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.2e-81 307.0 186 91.9
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 4.6e-81 305.1 231 75.3
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 6.2e-78 294.7 225 76.0
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 6.5e-75 284.6 234 73.5
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.4e-74 283.5 227 72.7
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 5.5e-74 281.6 196 81.1
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 1.1e-55 220.7 219 62.6
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.3e-54 217.2 221 58.8
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 2.2e-54 216.5 213 59.6
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 2.4e-53 213.0 224 59.8
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 4.1e-53 212.2 233 54.9
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 2.0e-52 209.9 234 56.0
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.4e-52 209.1 234 56.0
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 5.9e-52 208.4 244 55.3
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.0e-51 207.6 234 56.0
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.3e-51 207.2 234 56.0
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 1.7e-51 206.8 217 61.3
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-51 205.7 217 60.8
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 8.5e-51 204.5 220 56.8
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.1e-50 204.1 234 55.6
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 3.2e-50 202.6 214 57.5
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 7.9e-49 198.0 207 58.0
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.9e-48 195.7 209 58.4
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 5.1e-48 195.3 210 60.5
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 4.4e-47 192.2 230 55.7
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 4.4e-47 192.2 219 53.4
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 9.7e-47 191.0 211 57.3
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 1.3e-46 190.7 212 55.7
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 6.3e-46 188.3 214 54.7
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 8.2e-46 188.0 220 54.1
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 5.3e-45 185.3 204 56.4
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 4.5e-44 182.2 231 50.2
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.0e-43 181.0 222 52.3
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 2.2e-43 179.9 219 50.7
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.9e-43 179.5 208 52.4
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 3.8e-43 179.1 222 51.4
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 5.0e-43 178.7 217 53.9
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 8.5e-43 177.9 232 51.7
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 1.1e-42 177.6 116 84.5
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.5e-42 176.4 216 53.7
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 3.2e-42 176.0 224 50.4
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.1e-41 173.3 215 48.8
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 3.6e-41 172.6 206 53.4
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 6.1e-41 171.8 204 53.9
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 3.0e-40 169.5 232 49.1
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 1.1e-39 167.5 220 51.4
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.5e-39 167.2 232 49.1
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.0e-39 166.8 213 50.7
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.0e-39 166.8 224 49.1
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.0e-39 166.8 224 47.3
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 5.7e-39 165.2 107 82.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 2.2e-38 163.3 237 46.4
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 3.7e-38 162.5 191 51.8
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 3.7e-38 162.5 224 49.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.1e-37 161.0 227 44.5
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.8e-37 160.2 191 53.4
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.0e-36 156.8 226 46.0
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 3.5e-36 156.0 225 44.4
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 3.5e-36 156.0 215 46.0
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 5.9e-36 155.2 201 47.8
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.2e-35 153.3 205 46.8
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.9e-34 150.2 230 44.8
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.2e-34 149.4 217 45.6
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 4.2e-34 149.1 232 45.3
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 4.2e-34 149.1 222 43.7
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 5.5e-34 148.7 217 45.6
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 8.0e-33 144.8 213 45.1
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 4.0e-32 142.5 213 45.1
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.5e-31 140.6 210 46.2
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 7.5e-31 138.3 162 52.5
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 7.5e-31 138.3 222 41.4
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 9.8e-31 137.9 252 42.5
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.3e-30 137.5 218 46.3
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 2.8e-30 136.3 222 44.1
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 2.8e-30 136.3 213 43.7
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.8e-30 135.6 222 40.5
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 4.1e-29 132.5 221 43.9
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 4.1e-29 132.5 136 55.9
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 7.0e-29 131.7 229 41.9
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 9.1e-29 131.3 161 54.0
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 2.0e-28 130.2 231 40.3
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 2.7e-28 129.8 229 41.0
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 4.5e-28 129.0 238 41.2
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.3e-27 127.5 222 40.5
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.2e-27 126.7 181 48.1
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 1.9e-26 123.6 177 45.8
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.9e-26 123.6 185 47.0
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 6.1e-25 118.6 177 46.9
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 4.0e-24 115.9 229 41.5
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 4.0e-24 115.9 229 41.5
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.2e-23 114.4 218 43.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.5e-23 114.0 99 61.6
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.0e-23 113.6 193 45.6
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.0e-23 113.6 221 42.1
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 2.6e-23 113.2 229 41.0
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 7.5e-23 111.7 185 41.1
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 9.8e-23 111.3 220 40.9
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 1.7e-22 110.5 227 42.3
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 2.2e-22 110.2 222 41.0
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 4.9e-22 109.0 202 40.6
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 6.3e-22 108.6 222 41.4
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 8.3e-22 108.2 212 41.0
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.1e-21 106.3 208 42.3
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.1e-21 106.3 227 41.9
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 3.1e-21 106.3 222 40.5
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 3.1e-21 106.3 222 40.5
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 3.1e-21 106.3 222 40.5
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 3.1e-21 106.3 222 40.5
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 5.4e-21 105.5 209 42.1
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.0e-19 101.3 223 40.4
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 8.6e-19 98.2 213 37.1
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.9e-18 97.1 225 38.7
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 1.9e-18 97.1 202 39.6
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 5.6e-18 95.5 114 52.6
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 7.2e-18 95.1 118 47.5
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.6e-17 94.0 162 40.7
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.8e-16 90.5 116 50.0
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.8e-16 90.5 114 51.8
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 6.8e-16 88.6 219 37.9
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.2e-15 87.8 219 38.4
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.4e-15 85.9 224 37.1
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.3e-14 84.3 204 32.4
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 8.3e-14 81.6 147 39.5
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 7.0e-13 78.6 135 40.7
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 3.5e-12 76.3 145 39.3
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.4e-07 59.7 137 33.6


User provided reference genes

Program Settings