Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.3e-148 528.1 293 100.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 5.1e-141 504.6 293 96.2
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.5e-124 449.9 293 86.0
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 4.7e-118 428.3 297 81.8
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.0e-117 427.2 295 81.7
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 5.9e-113 411.4 279 84.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.2e-112 409.5 291 79.4
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 6.1e-110 401.4 291 79.0
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.0e-109 400.6 275 84.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.7e-108 394.8 297 77.8
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 7.5e-108 394.4 274 84.3
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 5.9e-105 384.8 273 82.4
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 8.8e-101 370.9 295 72.5
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.2e-99 366.3 294 74.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 9.5e-95 350.9 298 67.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.0e-93 345.9 301 66.4
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 4.0e-93 345.5 303 67.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.5e-92 343.6 304 66.4
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.8e-91 339.3 298 65.1
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.4e-90 337.0 299 66.6
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.4e-90 336.3 296 66.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.1e-90 335.5 294 67.7
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 5.4e-90 335.1 303 65.7
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.5e-89 332.4 301 65.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 7.8e-89 331.3 296 66.9
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 8.6e-88 327.8 305 64.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.5e-87 326.2 298 63.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.2e-86 323.9 297 67.0
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.6e-86 323.6 298 63.1
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.1e-86 323.2 305 63.0
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.0e-86 321.2 282 67.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.0e-85 320.9 296 65.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-85 320.1 294 65.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-85 320.1 294 64.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-84 317.4 303 62.7
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-84 316.2 277 67.9
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-84 315.8 281 66.5
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.4e-84 315.5 306 63.7
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 7.5e-84 314.7 297 60.6
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.8e-84 314.3 296 63.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.7e-83 312.4 297 60.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 6.4e-83 311.6 299 63.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.1e-82 310.8 299 62.9
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.1e-82 310.8 303 61.4
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.4e-82 309.7 293 61.1
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.2e-82 309.3 294 62.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 4.1e-82 308.9 300 61.0
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.5e-81 305.8 297 62.6
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 8.6e-80 301.2 289 63.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.5e-79 300.4 298 62.4
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-79 299.7 293 62.5
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 3.3e-79 299.3 298 61.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 7.3e-79 298.1 305 60.7
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.6e-78 295.8 307 59.6
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.4e-77 293.9 278 64.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.0e-76 290.0 291 60.1
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 2.6e-76 289.7 309 59.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.6e-76 289.7 296 61.5
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 8.3e-75 284.6 366 50.0
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 5.4e-74 282.0 303 59.4
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.4e-74 282.0 288 60.4
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.7e-73 279.6 291 59.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 7.8e-73 278.1 274 62.0
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.3e-72 277.3 291 59.8
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.6e-72 274.6 298 56.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-71 274.2 284 59.9
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 4.3e-71 272.3 295 58.6
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.3e-71 271.6 296 58.1
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.6e-70 269.2 296 57.4
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 3.6e-70 269.2 296 57.1
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 8.9e-69 264.6 471 42.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.0e-68 263.5 296 56.8
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 5.8e-68 261.9 333 52.3
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.9e-67 259.6 313 55.3
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.9e-66 256.9 298 54.7
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.2e-66 256.1 299 53.5
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.2e-66 256.1 313 53.7
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 4.1e-66 255.8 300 52.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 9.2e-66 254.6 289 56.7
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.6e-65 253.8 300 53.7
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 3.5e-65 252.7 271 57.9
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 6.0e-65 251.9 280 58.2
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 6.0e-65 251.9 300 53.3
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.3e-64 250.8 293 55.6
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 3.0e-64 249.6 300 53.3
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.6e-62 242.7 303 53.1
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 6.2e-62 241.9 300 52.0
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 8.1e-62 241.5 293 53.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.4e-61 240.7 300 51.0
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.4e-61 240.7 300 51.0
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.4e-61 240.7 295 52.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 8.9e-61 238.0 300 50.7
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.5e-60 237.3 300 52.0
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.5e-60 237.3 298 52.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 4.4e-60 235.7 296 53.7
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.4e-60 235.7 303 52.1
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 5.8e-60 235.3 298 52.7
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.3e-59 234.2 299 52.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.2e-59 233.4 296 51.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.8e-59 232.6 298 51.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.2e-58 229.6 272 54.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 7.1e-58 228.4 287 52.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.1e-57 226.9 285 52.3
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.3e-56 224.2 300 49.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.3e-56 223.4 300 49.3
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 6.6e-56 221.9 302 52.3
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.1e-55 221.1 270 54.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.5e-55 219.9 317 49.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.3e-55 219.5 353 43.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.4e-53 214.2 298 48.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 6.9e-53 211.8 286 50.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 6.9e-53 211.8 300 47.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-52 210.3 293 48.8
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 7.6e-52 208.4 301 45.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.9e-51 206.5 300 48.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-50 204.5 221 56.6
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.9e-50 203.8 301 45.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 4.2e-50 202.6 303 47.2
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 6.0e-49 198.7 265 50.6
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-48 197.6 303 45.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.3e-48 196.8 307 44.3
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.9e-48 196.1 301 44.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-47 194.5 273 47.6
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 4.3e-47 192.6 300 45.0
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-45 187.6 311 44.7
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.5e-44 184.1 251 50.6
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.4e-44 183.0 302 44.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.7e-43 180.6 219 55.7
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.7e-43 180.6 291 43.0
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 3.8e-43 179.5 277 45.8
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 8.4e-43 178.3 298 42.3
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 4.6e-41 172.6 308 42.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 3.9e-40 169.5 179 55.3
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.1e-39 167.9 332 40.7
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.7e-35 154.1 113 69.9
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.9e-34 150.6 267 42.3
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.5e-31 140.2 309 39.2
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.7e-30 136.3 365 34.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.2e-30 135.2 97 76.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.8e-29 134.0 361 34.6
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 9.0e-29 131.7 338 36.7
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.5e-28 131.0 92 73.9
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.5e-28 131.0 139 57.6
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 7.1e-26 122.1 162 52.5
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 3.9e-24 116.3 266 38.0
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.3e-23 113.2 171 48.5
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.2e-22 110.5 137 52.6
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.7e-22 109.8 259 36.7
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.1e-21 108.2 75 77.3
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.6e-17 93.2 76 65.8
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-16 90.5 72 66.7
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.3e-16 90.5 348 29.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.1e-16 89.4 72 66.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-15 88.2 63 74.6
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 1.1e-15 88.2 55 76.4
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 5.7e-15 85.9 62 69.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 7.4e-15 85.5 76 59.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-14 83.2 56 78.6
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-13 80.9 54 77.8
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-13 80.9 55 76.4
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-13 79.0 55 74.5
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-13 78.6 55 74.5
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-12 76.6 50 78.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 3.4e-12 76.6 76 53.9
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-11 75.1 50 76.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.3e-11 74.7 51 78.4
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 4.2e-10 69.7 49 69.4
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-09 67.8 63 63.5
TPR.G8204 Trifolium pratense HOM05D000108 ORTHO05D022289 8.8e-08 62.0 40 85.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-07 60.8 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.7e-07 59.3 39 74.4
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 9.7e-07 58.5 37 78.4
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.7e-06 57.8 105 36.2
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-06 57.8 39 71.8
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-06 57.4 39 74.4
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 2.8e-06 57.0 37 75.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.7e-06 56.6 49 59.2


User provided reference genes

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