Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.7e-122 442.6 212 100.0
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 5.8e-118 427.6 212 96.7
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 4.0e-111 404.8 212 90.1
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 6.0e-107 391.0 211 89.6
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.7e-98 362.8 203 82.8
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 3.9e-98 361.7 211 81.0
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.9e-98 361.7 211 79.1
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.1e-97 360.1 209 79.4
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.2e-96 356.7 212 76.9
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 2.8e-96 355.5 213 78.4
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.6e-96 355.1 213 79.3
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.7e-96 354.8 213 77.5
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 8.1e-96 354.0 213 79.8
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-95 353.6 209 78.0
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 3.1e-95 352.1 209 78.0
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 5.2e-95 351.3 209 79.9
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 6.8e-95 350.9 210 76.7
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 6.8e-95 350.9 211 77.7
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 8.9e-95 350.5 212 76.9
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.2e-94 350.1 213 77.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.5e-94 349.7 210 79.0
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 1.5e-94 349.7 214 76.6
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.0e-94 349.4 198 81.8
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 2.0e-94 349.4 209 77.0
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.0e-94 349.4 205 80.0
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.6e-94 349.0 213 77.9
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 3.4e-94 348.6 234 73.1
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.4e-94 348.6 213 77.9
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 4.4e-94 348.2 210 77.1
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 9.9e-94 347.1 213 77.5
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.2e-93 345.9 204 79.4
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 2.9e-93 345.5 207 77.3
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 4.9e-93 344.7 213 77.9
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 6.4e-93 344.4 213 75.1
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 213 77.9
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 209 75.6
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 209 75.6
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 6.4e-93 344.4 202 79.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 8.4e-93 344.0 212 75.0
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 8.4e-93 344.0 212 72.2
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 8.4e-93 344.0 209 74.6
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 8.4e-93 344.0 209 76.1
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.1e-92 343.6 209 75.6
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-92 343.6 213 76.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.4e-92 343.2 209 77.0
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.4e-92 343.2 211 76.3
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.4e-92 343.2 209 76.6
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.9e-92 342.8 204 77.5
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.9e-92 342.8 209 74.6
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.9e-92 342.8 204 77.0
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.4e-92 342.4 210 77.1
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 2.4e-92 342.4 209 75.1
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 2.4e-92 342.4 213 75.6
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.2e-92 342.0 209 74.6
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.2e-92 342.0 212 74.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.2e-92 342.0 213 77.5
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.2e-92 342.0 209 74.6
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 4.2e-92 341.7 210 73.3
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 5.4e-92 341.3 201 78.1
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 5.4e-92 341.3 209 75.6
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 5.4e-92 341.3 212 72.6
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.1e-92 340.9 212 71.2
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.1e-91 339.3 209 76.1
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.7e-91 339.0 201 77.6
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 4.6e-91 338.2 204 75.5
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 7.8e-91 337.4 213 76.1
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 7.8e-91 337.4 204 75.0
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.0e-90 337.0 208 74.5
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.0e-90 337.0 209 74.2
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.7e-90 336.3 205 74.6
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 3.0e-90 335.5 199 76.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 3.9e-90 335.1 201 76.6
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 5.1e-90 334.7 204 76.0
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 5.1e-90 334.7 210 71.9
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 5.1e-90 334.7 209 73.7
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.7e-90 334.0 199 77.4
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 8.7e-90 334.0 202 77.7
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.1e-89 333.6 208 73.6
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.1e-89 333.6 203 76.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.5e-89 333.2 204 75.0
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.5e-89 332.4 196 77.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.5e-89 332.4 196 77.0
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.5e-89 332.4 202 74.8
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 3.3e-89 332.0 209 74.6
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 3.3e-89 332.0 202 75.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.3e-89 332.0 213 74.2
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 3.3e-89 332.0 210 74.8
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 4.3e-89 331.6 202 75.2
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 5.6e-89 331.3 204 74.5
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 5.6e-89 331.3 202 74.3
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 7.3e-89 330.9 199 75.9
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.3e-89 330.9 196 76.5
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 7.3e-89 330.9 208 72.6
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 7.3e-89 330.9 196 76.5
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 9.6e-89 330.5 208 72.6
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 9.6e-89 330.5 210 74.3
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.3e-88 330.1 202 74.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.1e-88 329.3 193 78.2
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 3.6e-88 328.6 202 73.8
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 6.2e-88 327.8 198 76.3
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 2.4e-87 325.9 208 72.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.5e-86 323.2 209 71.8
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 4.9e-85 318.2 213 71.8
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 6.4e-85 317.8 207 70.5
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.9e-84 316.2 229 65.1
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 3.2e-84 315.5 203 72.9
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 5.4e-84 314.7 203 71.9
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 9.3e-84 313.9 207 70.0
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.2e-83 313.5 202 69.3
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.6e-83 313.2 204 70.1
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.0e-82 310.5 203 71.9
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 2.3e-82 309.3 253 63.2
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 3.3e-81 305.4 209 65.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.8e-79 299.7 166 83.7
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.5e-78 296.6 295 52.2
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.4e-78 295.4 199 70.4
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 2.9e-77 292.4 205 68.3
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.1e-76 290.4 174 78.2
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.0e-74 283.9 174 78.2
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 8.7e-66 254.2 145 80.7
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 3.7e-64 248.8 145 78.6
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.8e-63 246.5 421 38.0
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 4.5e-62 241.9 145 75.2
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.8e-61 238.8 172 67.4
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.2e-60 234.6 202 58.9
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 5.5e-52 208.4 140 67.1
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 9.4e-52 207.6 113 84.1
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.1e-47 194.1 198 48.5
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.9e-45 186.0 125 70.4
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 1.2e-43 180.6 196 48.5
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.3e-41 172.6 138 65.2
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 1.7e-40 170.2 195 46.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 2.5e-36 156.4 167 49.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 3.6e-35 152.5 84 78.6
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.7e-32 142.5 97 70.1
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 4.8e-32 142.1 74 86.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.3e-29 134.0 87 70.1
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 5.0e-29 132.1 89 71.9
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-20 104.4 67 70.1
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 4.2e-20 102.4 74 67.6
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 5.5e-20 102.1 66 77.3
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 3.7e-16 89.4 72 61.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.9e-16 89.0 62 69.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 5.2e-10 68.9 40 85.0
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.3e-08 64.3 35 74.3
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 6.4e-08 62.0 35 74.3
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 4.1e-07 59.3 59 55.9


User provided reference genes

Program Settings