Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.0e-33 145.2 74 100.0
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.3e-28 127.5 69 92.8
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 5.6e-28 127.1 69 92.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.2e-27 123.6 69 91.3
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 6.2e-27 123.6 69 91.3
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.6e-25 118.2 69 87.0
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.4e-25 117.5 69 85.5
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.4e-25 117.5 69 85.5
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 5.8e-25 117.1 69 84.1
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 7.6e-25 116.7 69 87.0
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.3e-24 115.9 72 80.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.3e-24 115.9 69 82.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.3e-24 115.9 69 84.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.7e-24 115.5 69 85.5
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-24 115.2 69 85.5
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 3.8e-24 114.4 69 81.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.8e-24 114.4 69 85.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.9e-24 114.0 69 82.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.4e-24 113.6 69 81.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 8.4e-24 113.2 69 84.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.1e-23 112.8 69 82.6
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.9e-23 112.1 69 81.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.9e-23 112.1 69 81.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.4e-23 111.7 69 82.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.2e-23 111.3 69 82.6
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.2e-23 111.3 69 78.3
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 4.2e-23 110.9 69 82.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.1e-23 110.2 69 79.7
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.1e-23 110.2 69 81.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.2e-22 109.4 69 78.3
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.2e-22 109.4 69 78.3
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.2e-22 109.4 69 81.2
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.6e-22 109.0 69 78.3
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.1e-22 108.6 69 79.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.1e-22 108.6 69 79.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-22 108.6 69 79.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.1e-22 108.6 69 79.7
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 4.6e-22 107.5 69 79.7
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 4.6e-22 107.5 69 76.8
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 6.0e-22 107.1 69 78.3
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.8e-22 106.7 69 76.8
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 7.8e-22 106.7 69 78.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 7.8e-22 106.7 69 76.8
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 7.8e-22 106.7 69 76.8
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.0e-21 106.3 69 76.8
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.3e-21 105.9 69 75.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.3e-21 105.1 69 76.8
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.3e-21 105.1 69 75.4
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.3e-21 105.1 69 75.4
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 3.0e-21 104.8 69 75.4
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 3.0e-21 104.8 69 73.9
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.1e-21 104.0 69 76.8
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 5.1e-21 104.0 69 76.8
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 5.1e-21 104.0 69 75.4
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 5.1e-21 104.0 69 75.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 8.7e-21 103.2 69 75.4
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 8.7e-21 103.2 69 73.9
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.1e-20 102.8 69 73.9
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.1e-20 102.8 69 73.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.1e-20 102.8 69 73.9
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.5e-20 102.4 69 75.4
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-20 102.4 69 73.9
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-20 102.4 69 72.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-20 102.4 69 72.5
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.9e-20 102.1 70 77.1
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.9e-20 102.1 69 73.9
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.9e-20 102.1 69 76.8
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.3e-20 101.3 69 73.9
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.3e-20 101.3 69 73.9
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.3e-20 101.3 69 73.9
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.3e-20 101.3 69 73.9
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 3.3e-20 101.3 69 75.4
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 4.3e-20 100.9 69 71.0
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-20 100.9 69 72.5
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.6e-20 100.5 69 72.5
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 5.6e-20 100.5 69 75.4
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.3e-19 99.4 69 72.5
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-19 99.4 69 72.5
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.6e-19 99.0 69 68.1
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.8e-19 98.2 69 66.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.8e-19 98.2 69 68.1
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.6e-19 97.8 69 68.1
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.8e-19 97.4 69 69.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 4.8e-19 97.4 69 69.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 6.2e-19 97.1 69 68.1
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.1e-18 96.3 70 74.3
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.1e-18 96.3 73 67.1
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.4e-18 95.9 69 66.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.4e-18 95.9 69 68.1
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-18 95.5 69 69.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.8e-18 95.5 69 69.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 69.6
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 69.6
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 69.6
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 69.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 72.5
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.4e-18 95.1 69 71.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.1e-18 94.7 69 66.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 3.1e-18 94.7 69 69.6
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.1e-18 94.7 69 72.5
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.1e-18 94.7 69 71.0
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.1e-18 94.7 68 67.6
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-18 94.4 69 68.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-18 94.0 69 68.1
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 5.3e-18 94.0 69 69.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.9e-18 93.6 69 68.1
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 9.0e-18 93.2 69 69.6
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 9.0e-18 93.2 69 68.1
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-17 92.8 69 68.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.2e-17 92.8 69 68.1
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.2e-17 92.8 69 68.1
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.5e-17 92.4 69 63.8
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.5e-17 92.4 71 63.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-17 92.0 69 68.1
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 7.6e-17 90.1 69 65.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 7.6e-17 90.1 69 68.1
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 9.9e-17 89.7 69 65.2
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-16 89.4 69 65.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-16 89.4 69 66.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.2e-16 88.6 71 59.2
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.8e-16 87.8 50 86.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 3.8e-16 87.8 64 68.8
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.2e-15 84.7 67 64.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 5.4e-15 84.0 68 60.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-14 82.4 57 70.2
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.5e-14 81.3 69 59.4
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.7e-11 71.2 129 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 4.0e-10 67.8 69 49.3
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 4.0e-10 67.8 69 47.8
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 6.9e-10 67.0 69 49.3
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 9.0e-10 66.6 69 46.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 9.0e-10 66.6 69 46.4
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.6e-09 63.5 38 78.9
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.7e-08 62.4 70 44.3
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 3.8e-08 61.2 38 78.9
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 8.4e-08 60.1 73 46.6
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.4e-07 59.3 43 69.8
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.3e-07 56.6 57 47.4


User provided reference genes

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