Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 4.0e-77 291.6 173 100.0
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 4.0e-77 291.6 173 100.0
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.8e-48 196.4 174 70.7
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.0e-48 195.7 134 76.1
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.0e-43 180.6 139 71.9
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.2e-43 179.5 125 74.4
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 7.2e-42 174.5 129 69.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 9.4e-42 174.1 125 71.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 5.1e-40 168.3 125 70.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 4.3e-39 165.2 130 67.7
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 3.7e-38 162.2 110 71.8
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.8e-37 159.8 129 65.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 2.2e-35 152.9 128 64.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 8.5e-35 151.0 133 59.4
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 9.4e-34 147.5 125 60.8
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.1e-33 146.4 128 64.8
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 7.9e-33 144.4 125 58.4
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.0e-32 142.5 119 60.5
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 3.9e-32 142.1 133 57.9
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.0e-31 139.8 129 56.6
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.3e-31 139.0 134 57.5
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.3e-31 139.0 134 57.5
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 4.4e-31 138.7 141 55.3
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.4e-31 137.9 128 58.6
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.3e-30 137.1 128 58.6
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.7e-30 136.7 165 48.5
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.7e-30 136.7 128 56.2
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.2e-30 136.3 128 57.8
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.7e-30 135.6 134 57.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.4e-29 133.7 120 60.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.4e-29 133.7 133 57.9
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.1e-29 132.1 129 56.6
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.3e-29 131.7 125 56.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 7.0e-29 131.3 125 59.2
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 9.1e-29 131.0 146 48.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.2e-28 130.6 136 52.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 2.6e-28 129.4 134 56.0
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.6e-28 129.4 124 54.8
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 4.5e-28 128.6 118 59.3
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.5e-28 128.6 122 52.5
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.7e-28 127.9 128 56.2
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.0e-27 127.5 125 55.2
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 2.9e-27 125.9 124 51.6
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.8e-27 125.6 132 52.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 3.8e-27 125.6 123 53.7
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 8.5e-27 124.4 126 55.6
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.5e-26 123.6 129 54.3
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.4e-26 120.9 125 52.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.6e-25 120.2 131 51.9
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.6e-25 120.2 113 52.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 2.1e-25 119.8 121 53.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.7e-25 119.4 113 54.0
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.7e-25 118.6 149 46.3
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 4.7e-25 118.6 141 48.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.4e-24 117.1 130 50.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.8e-24 116.7 61 91.8
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 2.3e-24 116.3 139 48.2
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 8.8e-24 114.4 120 50.0
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.5e-23 113.6 128 48.4
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.0e-23 113.2 118 49.2
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.0e-23 113.2 118 51.7
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.0e-23 113.2 118 51.7
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.6e-23 112.8 121 52.1
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.6e-23 112.8 124 49.2
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.3e-23 112.5 121 50.4
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.4e-23 112.1 133 45.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.4e-23 112.1 122 51.6
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 5.7e-23 111.7 135 43.7
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 7.5e-23 111.3 119 52.1
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 7.5e-23 111.3 89 62.9
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 9.7e-23 110.9 116 50.9
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.3e-22 110.5 133 45.1
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 2.2e-22 109.8 143 44.8
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 2.2e-22 109.8 120 48.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 4.8e-22 108.6 134 52.2
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 4.8e-22 108.6 125 48.0
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.3e-22 108.2 131 46.6
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 8.2e-22 107.8 135 40.7
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-21 107.5 116 49.1
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.8e-21 106.7 126 48.4
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.8e-21 106.7 126 47.6
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.4e-21 106.3 121 48.8
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 3.1e-21 105.9 177 39.5
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 9.1e-21 104.4 108 54.6
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.2e-20 104.0 110 48.2
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.5e-20 102.4 120 46.7
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.5e-20 102.4 120 46.7
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 3.5e-20 102.4 132 46.2
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.5e-20 102.4 117 45.3
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 5.9e-20 101.7 140 40.0
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 7.7e-20 101.3 120 48.3
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.0e-19 100.9 117 45.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-19 100.5 120 45.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.3e-19 100.5 124 45.2
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.3e-19 100.5 117 45.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.7e-19 100.1 140 43.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 1.7e-19 100.1 121 44.6
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-19 100.1 121 44.6
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 1.7e-19 100.1 121 44.6
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.7e-19 100.1 116 47.4
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 2.2e-19 99.8 120 49.2
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.2e-19 99.8 120 49.2
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.2e-19 99.8 122 44.3
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-19 99.4 117 42.7
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-19 99.4 110 44.5
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.9e-19 99.4 135 46.7
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.8e-19 99.0 116 46.6
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.8e-19 99.0 117 42.7
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.8e-19 99.0 116 46.6
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.8e-19 99.0 117 42.7
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.8e-19 99.0 115 45.2
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 5.0e-19 98.6 122 45.9
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 5.0e-19 98.6 120 45.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 6.5e-19 98.2 116 45.7
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 8.5e-19 97.8 120 47.5
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.5e-18 97.1 115 44.3
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.5e-18 96.3 117 41.9
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 4.2e-18 95.5 116 44.8
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 4.2e-18 95.5 119 47.1
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 5.5e-18 95.1 116 44.8
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 5.5e-18 95.1 113 50.4
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.7e-17 92.8 120 44.2
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.6e-17 92.4 112 48.2
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 3.6e-17 92.4 92 52.2
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 6.1e-17 91.7 126 40.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.1e-17 91.7 111 44.1
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.0e-16 90.9 120 42.5
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-15 87.4 113 44.2
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 7.5e-15 84.7 126 37.3
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.2e-14 83.2 106 41.5
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.8e-13 80.1 71 57.7
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 2.7e-12 76.3 110 40.9
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.9e-11 72.8 122 36.9
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-10 70.9 91 44.0
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.5e-10 70.5 43 69.8
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.8e-08 63.5 140 33.6
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.2e-08 62.0 39 71.8
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.2e-08 62.0 126 33.3
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.6e-07 59.7 118 29.7
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.3e-06 57.4 149 32.2
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 2.8e-06 56.2 108 36.1
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 4.9e-06 55.5 145 31.0
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 4.9e-06 55.5 145 31.0
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 6.3e-06 55.1 146 30.8
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 6.3e-06 55.1 127 29.9
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 8.3e-06 54.7 142 31.7
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 8.3e-06 54.7 142 31.7
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 8.3e-06 54.7 110 34.5


User provided reference genes

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