Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 3.3e-229 798.1 427 100.0
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 8.3e-217 756.9 427 92.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 4.6e-215 751.1 427 90.9
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 6.2e-212 740.7 427 89.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.1e-204 715.7 429 85.3
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.4e-202 708.0 427 88.5
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 9.9e-202 706.8 428 84.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.7e-201 706.1 427 84.3
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.2e-201 705.7 427 84.1
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.2e-199 699.9 389 90.0
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-199 698.7 427 83.4
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.5e-199 698.4 389 88.7
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 6.0e-199 697.6 390 88.7
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.3e-198 696.4 389 89.7
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 2.0e-194 682.6 427 80.6
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.4e-193 677.6 427 80.1
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.1e-192 676.8 389 85.3
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.2e-192 675.2 389 86.4
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.2e-192 674.9 389 85.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.4e-192 674.5 427 79.6
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 9.3e-192 673.7 389 84.8
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.3e-192 673.7 389 85.6
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.2e-191 673.3 427 79.2
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.2e-191 673.3 427 79.2
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.2e-191 673.3 427 79.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.2e-191 673.3 389 85.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.6e-191 672.9 427 80.1
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.7e-191 672.2 389 84.8
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 3.5e-191 671.8 386 85.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 4.6e-191 671.4 389 85.6
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 4.6e-191 671.4 428 80.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.6e-191 671.4 427 78.7
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 7.9e-191 670.6 389 85.1
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.0e-190 670.2 389 85.3
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.3e-190 669.8 428 78.3
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.8e-190 669.5 389 84.6
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 6.7e-190 667.5 427 78.9
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 6.7e-190 667.5 389 85.3
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 8.7e-190 667.2 427 79.4
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.3e-189 665.2 427 78.5
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.6e-189 664.5 389 84.8
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.4e-189 664.1 406 82.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 7.4e-189 664.1 384 85.2
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 9.6e-189 663.7 385 84.7
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.6e-188 662.9 389 84.6
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.8e-187 659.4 389 83.0
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.0e-187 658.3 389 83.8
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.0e-187 658.3 385 84.2
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 9.0e-187 657.1 389 83.5
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 2.0e-186 656.0 389 83.8
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.2e-185 652.5 427 78.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.1e-184 650.2 385 84.7
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.9e-184 649.4 427 78.2
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 6.0e-183 644.4 389 81.7
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.9e-183 644.0 389 82.8
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.0e-182 643.7 389 82.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.9e-182 641.7 385 82.1
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.9e-181 639.4 389 82.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.9e-181 639.4 390 82.1
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 3.3e-181 638.6 389 80.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 7.4e-181 637.5 381 82.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.6e-181 637.1 369 85.4
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.1e-180 636.0 428 75.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-179 633.6 389 79.7
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.4e-179 633.3 389 79.2
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.8e-179 632.9 389 79.9
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.3e-179 631.3 389 79.9
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.3e-179 631.3 389 80.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 4.5e-178 628.2 371 84.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.0e-177 627.1 431 73.8
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.3e-177 626.7 432 73.6
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-177 626.3 389 79.2
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.7e-177 626.3 392 80.6
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.2e-177 625.9 431 73.5
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 2.9e-177 625.5 389 79.2
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.9e-177 625.5 369 83.7
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 3.8e-177 625.2 389 79.2
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.9e-177 624.8 436 73.2
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 4.9e-177 624.8 389 79.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 8.4e-177 624.0 389 79.2
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.2e-176 622.1 433 73.9
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 9.3e-176 620.5 436 72.5
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 9.3e-176 620.5 389 80.5
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.7e-175 619.0 411 76.9
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.5e-175 618.6 389 80.5
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.0e-175 617.8 390 80.8
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.0e-175 617.8 372 81.7
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.0e-174 617.1 389 80.2
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.3e-174 616.7 427 73.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.3e-174 616.7 407 77.1
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.8e-174 616.3 427 73.3
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.8e-174 616.3 386 81.1
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.3e-174 615.9 427 75.6
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.0e-174 615.5 427 72.8
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 77.6
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 77.9
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 77.6
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 77.6
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 3.9e-174 615.1 389 77.9
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.1e-174 614.8 389 79.7
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.7e-174 614.4 430 73.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 8.7e-174 614.0 427 72.6
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.5e-173 613.2 389 77.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.5e-173 613.2 377 80.6
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-173 612.8 390 78.5
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-173 612.5 381 79.3
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 9.7e-173 610.5 427 72.4
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 9.7e-173 610.5 389 78.1
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.2e-172 609.4 389 77.9
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.2e-172 609.4 381 78.7
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 4.8e-172 608.2 389 78.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.8e-172 608.2 369 83.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 6.3e-172 607.8 389 76.9
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.7e-169 599.7 379 78.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.9e-169 599.0 363 81.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.8e-169 598.6 407 74.4
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.0e-169 598.2 367 80.9
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 6.5e-169 597.8 389 77.4
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.2e-167 593.6 354 82.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 2.1e-167 592.8 335 87.8
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.1e-165 587.0 475 65.1
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.5e-165 586.6 371 79.2
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 5.7e-165 584.7 389 75.6
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.7e-164 582.0 389 76.1
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.7e-164 582.0 386 75.4
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.1e-163 580.5 427 69.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.6e-162 575.9 379 77.6
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 3.6e-159 565.5 389 73.5
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.3e-158 562.8 401 73.3
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 8.8e-158 560.8 418 70.6
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 5.3e-155 551.6 374 70.9
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.5e-154 548.5 320 84.4
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.0e-153 547.4 322 82.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.0e-150 537.3 389 68.4
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.0e-150 535.8 400 71.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 2.6e-149 532.7 374 70.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.8e-148 529.3 416 69.2
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 2.4e-147 526.2 373 75.1
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 5.0e-145 518.5 376 72.1
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.5e-144 516.2 395 67.6
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 3.2e-144 515.8 433 69.1
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.6e-143 513.5 387 66.9
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 6.7e-142 508.1 320 77.5
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.1e-136 490.7 388 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.2e-133 480.7 402 62.4
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 3.4e-133 479.2 389 63.8
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.5e-128 463.8 294 78.2
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.2e-128 461.5 369 66.7
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.1e-118 429.5 241 88.8
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.4e-115 420.6 335 66.3
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.3e-108 397.5 271 73.1
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.1e-106 390.2 231 81.4
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.2e-102 375.6 211 89.6
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.9e-96 357.1 407 49.1
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 4.4e-93 345.9 383 49.9
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 7.1e-91 338.6 390 49.2
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.5e-85 320.9 273 59.7
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.8e-82 308.5 196 77.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.8e-79 299.3 315 55.9
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.7e-71 273.1 151 86.1
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.1e-66 257.3 222 62.6
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 3.9e-65 253.1 336 43.2
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.8e-63 246.9 302 46.7
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 7.1e-59 232.3 214 57.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.3e-56 223.4 304 41.4
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.6e-55 221.1 120 87.5
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.2e-51 206.5 428 36.4
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.0e-48 197.6 182 58.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 9.7e-32 142.1 95 75.8
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.4e-30 137.5 75 86.7
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 8.5e-28 129.0 85 76.5
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.0e-24 117.9 69 82.6
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.0e-22 109.4 75 69.3
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-21 107.5 61 82.0
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.1e-18 97.8 54 79.6
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 9.8e-16 89.0 60 71.7
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 4.9e-15 86.7 75 58.7
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.4e-14 85.1 84 51.2
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 3.1e-14 84.0 123 43.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.2e-13 82.0 85 50.6
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 9.5e-11 72.4 138 34.8
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 1.8e-06 58.2 33 81.8
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 5.4e-06 56.6 55 56.4


User provided reference genes

Program Settings