Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 2.9e-82 308.9 203 100.0
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 2.1e-37 159.8 148 85.1
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.8e-31 140.2 144 59.0
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 7.9e-24 114.8 166 51.8
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 4.5e-19 99.0 135 48.1
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 3.6e-16 89.4 153 62.7
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 3.6e-16 89.4 155 63.2
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.5e-14 84.0 65 67.7
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 2.0e-14 83.6 66 65.2
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 9.7e-14 81.3 76 56.6
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.3e-13 80.9 74 56.8
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.2e-13 80.1 73 56.2
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.8e-13 79.7 74 55.4
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 2.8e-13 79.7 66 62.1
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.7e-13 79.3 76 55.3
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 6.3e-13 78.6 69 60.9
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 6.3e-13 78.6 73 57.5
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 6.3e-13 78.6 63 65.1
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 8.2e-13 78.2 73 56.2
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 8.2e-13 78.2 72 56.9
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 8.2e-13 78.2 72 56.9
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 8.2e-13 78.2 60 68.3
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.1e-12 77.8 69 58.0
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 1.4e-12 77.4 59 67.8
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 1.4e-12 77.4 70 62.9
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.8e-12 77.0 72 54.2
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.4e-12 76.6 69 52.2
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.4e-12 76.6 70 61.4
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.4e-12 76.6 70 61.4
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.1e-12 76.3 69 59.4
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 3.1e-12 76.3 72 52.8
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 5.3e-12 75.5 72 56.9
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 1.5e-11 73.9 73 52.1
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 2.0e-11 73.6 69 58.0
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.6e-11 73.2 73 50.7
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.6e-11 73.2 74 54.1
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 3.4e-11 72.8 68 60.3
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 4.5e-11 72.4 57 64.9
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 4.5e-11 72.4 65 60.0
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 4.5e-11 72.4 74 52.7
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 5.9e-11 72.0 74 52.7
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 5.9e-11 72.0 69 55.1
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 5.9e-11 72.0 74 54.1
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 7.7e-11 71.6 64 60.9
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 7.7e-11 71.6 68 58.8
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.2e-10 70.1 41 80.5
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 2.2e-10 70.1 79 50.6
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.9e-10 69.7 56 64.3
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 2.9e-10 69.7 68 58.8
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 2.9e-10 69.7 57 66.7
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.9e-10 69.7 65 61.5
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.9e-10 69.7 65 61.5
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 6.5e-10 68.6 70 52.9
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 6.5e-10 68.6 64 54.7
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 8.5e-10 68.2 61 59.0
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 1.1e-09 67.8 76 51.3
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 1.4e-09 67.4 73 50.7
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.5e-09 66.6 51 64.7
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 2.5e-09 66.6 75 49.3
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 2.5e-09 66.6 147 55.1
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 3.2e-09 66.2 59 55.9
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 3.2e-09 66.2 64 57.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 3.2e-09 66.2 73 49.3
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 4.2e-09 65.9 74 48.6
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 5.5e-09 65.5 59 54.2
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 5.5e-09 65.5 67 55.2
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.5e-09 65.5 64 54.7
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 5.5e-09 65.5 64 54.7
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 7.2e-09 65.1 153 41.2
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 7.2e-09 65.1 67 52.2
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 9.4e-09 64.7 70 55.7
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.2e-08 64.3 61 55.7
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.1e-08 63.5 153 52.3
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.1e-08 63.5 61 55.7
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.0e-07 61.2 61 54.1
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 1.0e-07 61.2 61 54.1
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.0e-07 61.2 61 54.1
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 3.0e-07 59.7 56 53.6
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 5.1e-07 58.9 61 52.5
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.3e-06 56.2 64 53.1
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 3.3e-06 56.2 64 53.1
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.3e-06 56.2 64 53.1
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.4e-06 55.8 64 53.1


User provided reference genes

Program Settings