Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 6.7e-48 193.7 102 100.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 4.5e-36 154.5 105 81.9
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.2e-35 152.1 105 82.9
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.3e-32 142.1 106 80.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.5e-28 127.9 106 70.8
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-27 125.9 104 67.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.3e-27 125.6 107 71.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 5.0e-27 124.4 107 70.1
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 7.2e-26 120.6 102 65.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.2e-25 119.8 104 67.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.1e-25 119.0 104 69.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.1e-25 119.0 104 69.2
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.8e-25 118.6 106 67.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.8e-24 115.9 108 64.8
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 3.0e-24 115.2 107 64.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.5e-23 112.8 107 66.4
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 3.4e-23 111.7 107 59.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-21 106.3 107 61.7
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.4e-21 105.5 107 59.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 9.2e-21 103.6 106 60.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.6e-20 102.8 108 57.4
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.5e-20 101.7 103 57.3
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.0e-19 100.1 105 56.2
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 3.8e-19 98.2 105 61.0
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 8.6e-19 97.1 108 58.3
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.1e-18 96.7 109 57.8
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.1e-18 96.7 107 55.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.1e-18 96.7 107 57.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.5e-18 95.5 107 57.0
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 3.3e-18 95.1 107 57.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 3.3e-18 95.1 109 53.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.3e-18 95.1 105 52.4
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 4.3e-18 94.7 106 58.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.3e-18 94.7 107 57.0
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 7.3e-18 94.0 107 54.2
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 9.5e-18 93.6 111 55.0
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.8e-17 92.0 108 50.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.1e-17 90.9 111 55.0
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 6.1e-17 90.9 107 51.4
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.0e-16 90.1 105 52.4
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.8e-16 89.4 110 50.9
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.8e-16 89.4 116 53.4
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.8e-16 89.4 110 49.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-16 89.0 109 53.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-16 89.0 109 53.2
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 4.0e-16 88.2 107 48.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 4.0e-16 88.2 103 51.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.2e-16 87.8 113 54.0
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.2e-16 87.8 112 50.9
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 5.2e-16 87.8 108 53.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 6.8e-16 87.4 106 51.9
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.5e-15 86.3 106 52.8
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-15 86.3 108 53.7
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.5e-15 86.3 108 54.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-15 86.3 106 50.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.0e-15 85.9 107 53.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.4e-15 85.1 113 51.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 5.8e-15 84.3 105 53.3
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.8e-15 84.3 101 52.5
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.8e-15 84.3 101 52.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 5.8e-15 84.3 100 50.0
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 7.5e-15 84.0 107 50.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 7.5e-15 84.0 111 54.1
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 7.5e-15 84.0 105 54.3
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 9.8e-15 83.6 94 57.4
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.3e-14 83.2 102 46.1
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.2e-14 82.4 110 50.0
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.2e-14 82.4 101 52.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.2e-14 82.4 113 49.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.9e-14 82.0 111 46.8
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 3.7e-14 81.6 105 51.4
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 3.7e-14 81.6 105 51.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 3.7e-14 81.6 105 51.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 3.7e-14 81.6 105 51.4
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.9e-14 81.3 107 50.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 4.9e-14 81.3 106 44.3
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 8.3e-14 80.5 100 48.0
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 8.3e-14 80.5 105 51.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 112 45.5
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 47.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-13 79.7 107 52.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-13 79.7 107 52.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-13 79.7 107 52.3
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.4e-13 79.7 103 50.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.8e-13 79.3 107 50.5
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.8e-13 79.3 104 51.9
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.4e-13 79.0 109 52.3
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.2e-13 78.6 109 50.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 3.2e-13 78.6 107 49.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.1e-13 78.2 104 51.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 4.1e-13 78.2 109 49.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.4e-13 77.8 115 48.7
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 7.0e-13 77.4 107 47.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 9.2e-13 77.0 110 49.1
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 48.6
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.2e-12 76.6 109 50.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.2e-12 76.6 109 46.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.0e-12 75.9 105 47.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 3.5e-12 75.1 106 46.2
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.6e-12 74.7 104 49.0
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 4.6e-12 74.7 107 45.8
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 7.8e-12 73.9 112 44.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 7.8e-12 73.9 107 47.7
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.0e-11 73.6 101 42.6
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.3e-11 72.4 112 44.6
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.3e-11 72.4 106 45.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.0e-11 72.0 115 47.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 6.6e-11 70.9 109 42.2
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 8.6e-11 70.5 109 42.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 8.6e-11 70.5 113 40.7
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-10 70.1 107 45.8
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-10 70.1 107 45.8
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-10 70.1 93 50.5
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-10 70.1 87 52.9
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.9e-10 69.3 78 51.3
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.9e-10 69.3 103 42.7
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.3e-10 68.6 113 44.2
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.3e-10 68.6 113 39.8
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.3e-10 68.6 113 39.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.6e-10 67.8 108 45.4
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 5.6e-10 67.8 111 47.7
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.6e-10 67.8 110 43.6
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.2e-09 66.6 107 45.8
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.2e-09 66.6 105 43.8
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.2e-09 66.6 107 43.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.1e-09 65.9 92 45.7
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 2.1e-09 65.9 107 43.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.1e-09 65.9 106 44.3
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.6e-09 65.1 108 45.4
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.6e-09 65.1 108 45.4
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.6e-09 65.1 108 44.4
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 6.2e-09 64.3 39 76.9
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.0e-09 63.9 109 42.2
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 1.8e-08 62.8 99 46.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.1e-08 62.0 108 44.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 3.1e-08 62.0 119 40.3
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 6.8e-08 60.8 93 45.2
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 6.8e-08 60.8 38 76.3
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.2e-07 60.1 108 39.8
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.5e-07 59.7 81 48.1
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.0e-07 59.3 86 46.5
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.6e-07 58.9 103 41.7
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.6e-07 58.9 109 40.4
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 3.4e-07 58.5 86 44.2
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.4e-07 58.5 110 41.8
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 5.8e-07 57.8 86 43.0
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 1.3e-06 56.6 106 41.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-06 56.2 107 40.2
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.2e-06 55.8 38 71.1
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.2e-06 55.8 121 36.4
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 6.4e-06 54.3 38 65.8
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 8.3e-06 53.9 107 39.3
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 8.3e-06 53.9 89 40.4
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.3e-06 53.9 38 73.7


User provided reference genes

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