Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G083901 Glycine max HOM05D006596 ORTHO05D008497 2.7e-110 402.1 219 100.0
TPR.G39620 Trifolium pratense HOM05D006596 ORTHO05D008497 2.8e-59 232.6 204 69.6
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 7.2e-55 218.0 185 62.2
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 9.7e-52 207.6 185 71.4
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 3.7e-51 205.7 191 52.4
Ca_11668_v3 Cicer arietinum L. HOM05D006596 ORTHO05D008497 2.9e-48 196.1 177 69.5
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 4.8e-43 178.7 95 85.3
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 9.1e-42 174.5 187 57.2
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 3.8e-40 169.1 214 43.9
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 3.2e-39 166.0 165 46.1
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 3.2e-39 166.0 96 78.1
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 1.0e-37 161.0 95 76.8
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.4e-37 160.6 214 45.3
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 1.8e-37 160.2 188 46.8
AL6G16490 Arabidopsis lyrata HOM05D006596 ORTHO05D008497 3.9e-37 159.1 190 46.3
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 5.2e-37 158.7 168 45.8
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 5.2e-37 158.7 168 45.8
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 8.8e-37 157.9 165 57.6
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 2.6e-36 156.4 172 46.5
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.6e-36 156.4 169 58.6
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.6e-36 156.4 172 46.5
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 2.2e-35 153.3 95 73.7
BolC9t59785H Brassica oleracea HOM05D006596 ORTHO05D008497 2.8e-35 152.9 216 42.1
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.8e-35 152.9 216 43.1
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 7.0e-34 148.3 216 42.1
Carub.0006s0529 Capsella rubella HOM05D006596 ORTHO05D008497 2.6e-33 146.4 186 45.2
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 2.6e-33 146.4 214 45.8
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 1.3e-32 144.1 214 39.3
Gohir.A11G315300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 1.3e-32 144.1 192 50.0
Cfa020083 Carpinus fangiana HOM05D006596 ORTHO05D008497 2.2e-32 143.3 151 55.0
FAN09G2534 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.2e-32 143.3 214 46.7
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.5e-31 139.8 214 46.3
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 4.2e-31 139.0 139 64.7
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 3.6e-30 136.0 189 40.2
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 8.0e-30 134.8 95 64.2
A10p29980 Brassica napus HOM05D006596 ORTHO05D008497 7.5e-28 128.3 179 44.7
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 3.7e-27 125.9 195 32.8
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 5.3e-26 122.1 135 60.7
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 9.1e-26 121.3 165 42.4
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 2.0e-25 120.2 159 46.5
Prupe.7G091000 Prunus persica HOM05D006596 ORTHO05D008497 1.0e-24 117.9 132 62.1
Lj5g0008032 Lotus japonicus HOM05D006596 ORTHO05D008497 2.2e-24 116.7 66 78.8
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 1.5e-23 114.0 95 53.7
Aqoxy1G00603 Aquilegia oxysepala HOM05D006596 ORTHO05D008497 4.2e-23 112.5 95 49.5
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 1.6e-22 110.5 58 84.5
Duzib093G1929 Durio zibethinus HOM05D006596 ORTHO05D008497 8.0e-22 108.2 134 56.7
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 1.8e-21 107.1 130 53.8
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 2.3e-21 106.7 145 55.2
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 3.0e-21 106.3 134 54.5
AUR62000205 Chenopodium quinoa HOM05D006596 ORTHO05D008497 4.0e-21 105.9 92 51.1
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 6.8e-21 105.1 109 45.9
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 1.5e-20 104.0 142 40.1
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 1.5e-20 104.0 95 53.7
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 7.5e-20 101.7 128 57.8
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 8.3e-19 98.2 92 51.1
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 1.1e-18 97.8 93 50.5
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 3.5e-17 92.8 95 45.3
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 1.3e-16 90.9 95 41.1
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 1.7e-16 90.5 217 36.9
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 1.9e-15 87.0 80 48.8
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 5.5e-15 85.5 135 45.9
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 2.3e-13 80.1 107 58.9
CAN.G554.4 Capsicum annuum HOM05D006596 ORTHO05D008497 6.8e-13 78.6 73 45.2
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 1.5e-12 77.4 95 37.9
Psat2g142880 Pisum sativum HOM05D006596 ORTHO05D008497 2.6e-12 76.6 136 50.7
CSS0017956 Camellia sinensis var. sinensis HOM05D006596 ORTHO05D008497 4.9e-11 72.4 50 58.0
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 1.1e-10 71.2 49 63.3
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 3.1e-10 69.7 95 36.8
Nn4g26016 Nelumbo nucifera HOM05D006596 ORTHO05D008497 4.1e-10 69.3 96 58.3
Rhsim03G0062300 Rhododendron simsii HOM05D006596 ORTHO05D008497 9.2e-10 68.2 47 59.6
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 1.2e-09 67.8 149 33.6
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 1.6e-09 67.4 84 35.7
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 1.6e-09 67.4 50 50.0
BcaC09g50572 Brassica carinata HOM05D006596 ORTHO05D008497 3.5e-09 66.2 155 28.4
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 5.9e-09 65.5 50 56.0
Lj1P1058T24 Lonicera japonica HOM05D006596 ORTHO05D008497 5.9e-09 65.5 46 56.5
COL.COLO4_29516 Corchorus olitorius HOM05D006596 ORTHO05D008497 1.0e-08 64.7 54 53.7
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 3.8e-08 62.8 51 56.9
Prupe.3G134300 Prunus persica HOM05D007173 ORTHO05D009151 6.6e-08 62.0 85 35.3
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 8.6e-08 61.6 137 35.0
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 8.6e-08 61.6 95 31.6
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 1.5e-07 60.8 201 21.9
Dinv11883 Davidia involucrata HOM05D006596 ORTHO05D008497 1.9e-07 60.5 51 49.0
Lalb_Chr18g0048891 Lupinus albus HOM05D007173 ORTHO05D009151 1.9e-07 60.5 71 42.3
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.5e-07 60.1 202 21.8
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.5e-07 60.1 202 21.8
QL10p041753 Quercus lobata HOM05D007173 ORTHO05D009151 2.5e-07 60.1 85 35.3
BcaC09g50571 Brassica carinata HOM05D006596 ORTHO05D008497 3.3e-07 59.7 75 37.3
CiPaw.03G118400 Carya illinoinensis HOM05D007173 ORTHO05D009151 3.3e-07 59.7 85 34.1
TAR383G0679 Trochodendron aralioides HOM05D007173 ORTHO05D009151 3.3e-07 59.7 71 40.8
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 4.3e-07 59.3 85 34.1
Cfa007278 Carpinus fangiana HOM05D007173 ORTHO05D009151 5.6e-07 58.9 83 37.3
FAN02G2250 Fragaria x ananassa HOM05D007173 ORTHO05D009151 5.6e-07 58.9 85 35.3
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 5.6e-07 58.9 89 30.3
FvH4_6g24130 Fragaria vesca HOM05D007173 ORTHO05D009151 7.3e-07 58.5 85 35.3
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 9.5e-07 58.2 202 21.8
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 1.2e-06 57.8 224 23.2
Ciclev10000792m.g Citrus clementina HOM05D007173 ORTHO05D009151 1.6e-06 57.4 85 31.8
Manes.12G158300 Manihot esculenta HOM05D007173 ORTHO05D009151 1.6e-06 57.4 198 21.2
VMungo1215G2624 Vigna mungo HOM05D007409 ORTHO05D009264 1.6e-06 57.4 89 29.2
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 2.1e-06 57.0 203 21.2
FAN14G5374 Fragaria x ananassa HOM05D007173 ORTHO05D009151 2.1e-06 57.0 85 34.1
GSVIVG01026463001 Vitis vinifera HOM05D007173 ORTHO05D009151 2.1e-06 57.0 85 32.9
Dinv24080 Davidia involucrata HOM05D006596 ORTHO05D008497 2.8e-06 56.6 84 34.5
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 2.8e-06 56.6 51 47.1
Os12g0456100 Oryza sativa ssp. japonica HOM05D006596 ORTHO05D008497 2.8e-06 56.6 179 33.5
TPR.G10977 Trifolium pratense HOM05D007173 ORTHO05D009151 2.8e-06 56.6 85 34.1
Phvul.003G009700 Phaseolus vulgaris HOM05D007409 ORTHO05D009264 3.6e-06 56.2 89 28.1
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 3.6e-06 56.2 195 21.5
Actinidia24599 Actinidia chinensis HOM05D002460 ORTHO05D002716 4.7e-06 55.8 73 35.6
ClCG08G010340 Citrullus lanatus HOM05D005622 ORTHO05D002854 4.7e-06 55.8 203 21.7
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 6.1e-06 55.5 78 33.3
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 6.1e-06 55.5 80 32.5
Nn6g34600 Nelumbo nucifera HOM05D006596 ORTHO05D008497 6.1e-06 55.5 52 44.2
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 6.1e-06 55.5 84 34.5
Psat5g227600 Pisum sativum HOM05D007173 ORTHO05D009151 6.1e-06 55.5 85 32.9
MELO3C033379.2 Cucumis melo HOM05D007173 ORTHO05D009151 8.0e-06 55.1 85 32.9
Medtr3g008430 Medicago truncatula HOM05D007173 ORTHO05D009151 8.0e-06 55.1 71 38.0
Nn6g33908 Nelumbo nucifera HOM05D007173 ORTHO05D009151 8.0e-06 55.1 85 30.6
Nitab4.5_0000923g0180 Nicotiana tabacum HOM05D007173 ORTHO05D009151 8.0e-06 55.1 85 34.1
Oeu014937.1 Olea europaea HOM05D000300 ORTHO05D000383 8.0e-06 55.1 96 26.0


User provided reference genes

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