Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 1.1e-140 503.4 284 100.0
Phvul.007G268400 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 5.4e-79 298.5 288 56.2
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 7.6e-73 278.1 219 61.6
VMungo0720G0515 Vigna mungo HOM05D008136 ORTHO05D002052 3.1e-58 229.6 288 52.8
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 2.6e-57 226.5 211 56.4
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 1.4e-50 204.1 212 49.1
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 9.0e-50 201.4 239 46.4
Glyma.19G199000 Glycine max HOM05D008136 ORTHO05D002052 4.6e-46 189.1 216 45.4
Psat3g029080 Pisum sativum HOM05D008136 ORTHO05D002052 1.9e-44 183.7 214 46.3
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 4.8e-43 179.1 219 45.2
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 3.4e-41 172.9 216 44.0
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 8.4e-40 168.3 251 42.6
VMungo1383G0618 Vigna mungo HOM05D008136 ORTHO05D002052 7.9e-38 161.8 216 41.2
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 2.3e-21 107.1 219 31.1
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 4.3e-20 102.8 190 33.7
Lalb_Chr14g0368861 Lupinus albus HOM05D008136 ORTHO05D002052 9.7e-20 101.7 179 35.2
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 2.2e-19 100.5 205 31.2
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 2.4e-18 97.1 218 28.9
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 4.1e-18 96.3 289 30.1
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.6e-17 93.6 215 27.9
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 2.6e-17 93.6 196 31.1
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 3.4e-17 93.2 214 29.9
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 5.9e-17 92.4 211 33.6
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 1.0e-16 91.7 244 27.9
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 1.3e-16 91.3 249 28.5
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 1.7e-16 90.9 227 27.3
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 2.2e-16 90.5 242 27.7
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 5.0e-16 89.4 263 25.5
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.1e-15 88.2 220 26.8
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 1.4e-15 87.8 223 33.6
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.9e-15 87.4 215 29.8
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.9e-15 87.4 172 35.5
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.5e-15 87.0 209 29.7
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.5e-15 87.0 215 29.8
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 2.5e-15 87.0 217 30.9
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 3.2e-15 86.7 210 26.7
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 3.2e-15 86.7 210 26.7
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 3.2e-15 86.7 210 26.7
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 5.5e-15 85.9 223 27.4
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 7.2e-15 85.5 223 26.5
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.2e-14 84.7 229 27.1
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 2.7e-14 83.6 223 26.9
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 2.7e-14 83.6 223 26.9
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 2.7e-14 83.6 256 27.7
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.6e-14 83.2 222 26.1
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 4.7e-14 82.8 223 30.9
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 7.9e-14 82.0 203 25.1
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 1.0e-13 81.6 208 25.5
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 1.8e-13 80.9 257 26.5
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 3.0e-13 80.1 187 32.1
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 3.9e-13 79.7 203 25.1
Lalb_Chr25g0288041 Lupinus albus HOM05D008136 ORTHO05D002052 1.1e-12 78.2 187 30.5
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 1.5e-12 77.8 295 28.5
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 1.5e-12 77.8 295 28.5
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 2.0e-12 77.4 199 26.1
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 2.0e-12 77.4 304 25.3
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 2.0e-12 77.4 298 24.2
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 3.3e-12 76.6 199 26.1
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 4.4e-12 76.3 228 28.1
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 4.4e-12 76.3 208 29.8
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 5.7e-12 75.9 174 25.9
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.7e-12 75.9 213 26.3
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 7.4e-12 75.5 209 24.4
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 9.7e-12 75.1 219 27.4
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 9.7e-12 75.1 221 27.1
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.3e-11 74.7 225 29.3
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.3e-11 74.7 197 24.9
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.7e-11 74.3 193 29.0
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 2.2e-11 73.9 202 25.7
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 2.2e-11 73.9 256 25.0
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.2e-11 73.9 255 25.1
Sed0009075 Sechium edule HOM05D002687 ORTHO05D002052 2.2e-11 73.9 251 26.7
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.8e-11 73.6 222 27.0
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 2.8e-11 73.6 222 26.1
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.8e-11 73.6 224 25.4
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.8e-11 73.6 212 27.8
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.7e-11 73.2 194 27.3
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 4.8e-11 72.8 230 28.3
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 4.8e-11 72.8 230 28.3
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 4.8e-11 72.8 230 28.3
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 6.3e-11 72.4 201 24.9
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.1e-10 71.6 225 26.7
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.4e-10 71.2 194 25.8
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.4e-10 71.2 204 29.9
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 1.4e-10 71.2 204 29.9
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 1.8e-10 70.9 214 23.4
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.8e-10 70.9 222 23.9
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 2.4e-10 70.5 225 28.0
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 2.4e-10 70.5 209 25.4
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 3.1e-10 70.1 166 28.9
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 3.1e-10 70.1 221 27.6
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 4.1e-10 69.7 193 28.5
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 4.1e-10 69.7 193 28.5
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 4.1e-10 69.7 193 28.5
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 4.1e-10 69.7 244 24.6
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 4.1e-10 69.7 205 29.3
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 5.3e-10 69.3 209 26.8
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 7.0e-10 68.9 219 24.2
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 7.0e-10 68.9 181 28.7
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 9.1e-10 68.6 206 26.2
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.6e-09 67.8 193 26.9
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.6e-09 67.8 220 24.5
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-09 67.8 216 28.2
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 2.0e-09 67.4 239 21.3
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.0e-09 67.4 218 25.7
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.0e-09 67.4 203 31.5
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 2.6e-09 67.0 300 26.7
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 3.5e-09 66.6 191 22.5
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 3.5e-09 66.6 218 28.0
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 4.5e-09 66.2 216 21.3
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 4.5e-09 66.2 217 27.2
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 5.9e-09 65.9 215 24.2
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 7.7e-09 65.5 217 26.3
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 7.7e-09 65.5 243 22.2
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.7e-09 65.5 246 23.6
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.0e-08 65.1 162 29.0
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 1.3e-08 64.7 221 26.7
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 1.7e-08 64.3 216 26.9
MELO3C025576.2 Cucumis melo HOM05D002687 ORTHO05D034712 1.7e-08 64.3 209 24.9
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.7e-08 64.3 184 25.5
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 1.7e-08 64.3 221 24.9
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 2.2e-08 63.9 218 24.3
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 2.2e-08 63.9 213 24.9
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 2.2e-08 63.9 188 25.5
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 2.9e-08 63.5 217 25.8
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 2.9e-08 63.5 222 22.5
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 2.9e-08 63.5 217 26.3
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-08 63.5 169 24.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-08 63.5 197 28.9
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.9e-08 63.5 197 28.9
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 3.8e-08 63.2 201 28.4
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 3.8e-08 63.2 193 26.9
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 3.8e-08 63.2 193 26.9
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 3.8e-08 63.2 208 26.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 3.8e-08 63.2 225 24.9
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 5.0e-08 62.8 208 24.0
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 5.0e-08 62.8 219 25.6
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 5.0e-08 62.8 192 25.0
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 5.0e-08 62.8 218 24.8
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 6.5e-08 62.4 218 23.9
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 6.5e-08 62.4 224 29.0
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 6.5e-08 62.4 214 26.2
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 6.5e-08 62.4 226 27.4
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.5e-08 62.0 212 25.0
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 8.5e-08 62.0 184 25.0
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.5e-07 61.2 183 25.7
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.9e-07 60.8 219 25.6
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.9e-07 60.8 193 22.3
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.9e-07 60.8 234 22.6
BcaB01g00364 Brassica carinata HOM05D008136 ORTHO05D002052 2.5e-07 60.5 99 37.4
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.5e-07 60.5 221 24.0
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 2.5e-07 60.5 223 26.5
Ciclev10012623m.g Citrus clementina HOM05D002687 ORTHO05D002052 3.2e-07 60.1 226 22.6
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 3.2e-07 60.1 212 25.5
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 5.5e-07 59.3 197 24.4
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.5e-07 59.3 193 26.9
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 7.2e-07 58.9 206 27.2
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 7.2e-07 58.9 187 27.3
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.2e-07 58.9 208 23.1
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.2e-07 58.9 208 23.1
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 7.2e-07 58.9 219 25.6
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 1.2e-06 58.2 201 23.9
Cfa009946 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.6e-06 57.8 229 24.9
Peaxi162Scf00342g00033 Petunia axillaris HOM05D000973 ORTHO05D000652 1.6e-06 57.8 157 26.8
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 2.1e-06 57.4 194 25.8
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.7e-06 57.0 210 25.7
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 3.6e-06 56.6 216 25.5
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 4.7e-06 56.2 223 25.6
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 8.0e-06 55.5 139 29.5
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 8.0e-06 55.5 156 25.6
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 8.0e-06 55.5 218 23.9
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 8.0e-06 55.5 222 24.8
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 8.0e-06 55.5 183 24.6
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 8.0e-06 55.5 222 27.5


User provided reference genes

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