Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G080102 Glycine max HOM05D019450 ORTHO05D022766 1.3e-111 406.4 200 100.0
Glyma.10G080152 Glycine max HOM05D019450 ORTHO05D022766 1.3e-108 396.4 200 98.0
Glyma.10G080301 Glycine max HOM05D019450 ORTHO05D022766 4.0e-36 155.6 161 50.3
Glyma.10G080751 Glycine max HOM05D019450 ORTHO05D022766 8.6e-31 137.9 204 41.2
VMungo0720G2632 Vigna mungo HOM05D019450 ORTHO05D022766 1.1e-30 137.5 190 40.5
Phvul.007G268500 Phaseolus vulgaris HOM05D019450 ORTHO05D022766 1.1e-25 120.9 198 34.8
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.8e-12 77.0 195 28.2
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.0e-12 75.9 174 27.6
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.6e-11 71.6 187 27.3
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.9e-11 71.2 191 27.2
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.8e-10 69.3 186 25.8
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 8.4e-10 68.2 163 28.2
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.4e-09 66.6 151 29.1
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 4.1e-09 65.9 177 24.9
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 4.1e-09 65.9 177 24.9
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 4.1e-09 65.9 177 24.9
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 5.4e-09 65.5 181 25.4
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 5.4e-09 65.5 180 25.0
MD09G1193000 Malus domestica HOM05D002137 ORTHO05D002144 2.7e-08 63.2 149 26.2
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.7e-08 63.2 156 23.7
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 2.7e-08 63.2 156 23.7
TPR.G6537 Trifolium pratense HOM05D002137 ORTHO05D002144 3.5e-08 62.8 150 23.3
CiPaw.02G045000 Carya illinoinensis HOM05D000733 ORTHO05D000644 4.6e-08 62.4 158 28.5
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 6.0e-08 62.0 146 26.7
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 6.0e-08 62.0 187 23.5
Lj2g0021480 Lotus japonicus HOM05D000980 ORTHO05D000649 6.0e-08 62.0 181 28.7
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 7.8e-08 61.6 146 26.7
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 7.8e-08 61.6 181 26.5
AUR62020241 Chenopodium quinoa HOM05D000733 ORTHO05D000644 1.0e-07 61.2 153 30.1
CARHR130220 Cardamine hirsuta HOM05D000733 ORTHO05D000644 1.3e-07 60.8 153 26.1
CiPaw.01G083300 Carya illinoinensis HOM05D000733 ORTHO05D000644 1.3e-07 60.8 155 26.5
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.3e-07 60.8 176 27.8
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 1.3e-07 60.8 171 21.6
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 1.7e-07 60.5 165 28.5
Medtr6g471080 Medicago truncatula HOM05D000980 ORTHO05D000649 1.7e-07 60.5 164 28.0
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.7e-07 60.5 156 22.4
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 2.3e-07 60.1 188 23.9
Lj2g0001681 Lotus japonicus HOM05D000980 ORTHO05D000649 2.3e-07 60.1 167 28.1
Dinv31534 Davidia involucrata HOM05D002687 ORTHO05D002052 3.0e-07 59.7 168 26.8
Medtr1g057420 Medicago truncatula HOM05D000733 ORTHO05D000644 3.0e-07 59.7 173 28.9
QL08p047342 Quercus lobata HOM05D000733 ORTHO05D000644 3.0e-07 59.7 155 25.2
TAR629G1326 Trochodendron aralioides HOM05D000733 ORTHO05D000644 3.0e-07 59.7 155 25.8
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-07 59.7 172 25.0
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-07 59.7 172 25.0
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 3.9e-07 59.3 168 23.2
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 3.9e-07 59.3 168 23.2
Medtr7g106050 Medicago truncatula HOM05D000733 ORTHO05D000644 3.9e-07 59.3 153 28.8
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 3.9e-07 59.3 187 26.7
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 3.9e-07 59.3 179 24.6
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 5.1e-07 58.9 180 22.8
A04p06910 Brassica napus HOM05D000733 ORTHO05D000644 5.1e-07 58.9 158 25.9
BraA04t16391Z Brassica rapa HOM05D000733 ORTHO05D000644 5.1e-07 58.9 158 25.9
Glyma.07G103900 Glycine max HOM05D000980 ORTHO05D000649 5.1e-07 58.9 178 27.0
BcaB02g08568 Brassica carinata HOM05D000733 ORTHO05D000644 6.6e-07 58.5 158 25.9
BcaC02g09255 Brassica carinata HOM05D000733 ORTHO05D000644 6.6e-07 58.5 158 25.9
C04p40560 Brassica napus HOM05D000733 ORTHO05D000644 6.6e-07 58.5 158 25.9
BolC4t25636H Brassica oleracea HOM05D000733 ORTHO05D000644 6.6e-07 58.5 158 25.9
CSS0006237 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000644 6.6e-07 58.5 164 28.0
QL01p014807 Quercus lobata HOM05D000733 ORTHO05D000649 6.6e-07 58.5 168 26.8
Cpa.g.sc104.47 Carica papaya HOM05D000733 ORTHO05D000644 8.7e-07 58.2 153 27.5
Medtr6g070890 Medicago truncatula HOM05D000980 ORTHO05D000649 8.7e-07 58.2 164 27.4
Medtr6g071410 Medicago truncatula HOM05D000980 ORTHO05D000649 8.7e-07 58.2 164 27.4
TPR.G35571 Trifolium pratense HOM05D002687 ORTHO05D002052 8.7e-07 58.2 166 24.7
Glyma.19G198900 Glycine max HOM05D000733 ORTHO05D000644 1.1e-06 57.8 151 27.2
Prupe.7G097100 Prunus persica HOM05D000733 ORTHO05D000644 1.1e-06 57.8 170 25.9
TPR.G35556 Trifolium pratense HOM05D000733 ORTHO05D000644 1.1e-06 57.8 153 27.5
VMungo0331G1334 Vigna mungo HOM05D000733 ORTHO05D000644 1.1e-06 57.8 175 26.9
Ca_09049_v3 Cicer arietinum L. HOM05D000733 ORTHO05D000644 1.5e-06 57.4 153 27.5
Lalb_Chr25g0288051 Lupinus albus HOM05D000733 ORTHO05D000644 1.5e-06 57.4 153 27.5
Phvul.010G119800 Phaseolus vulgaris HOM05D000733 ORTHO05D000644 1.5e-06 57.4 175 26.3
TAR375G0206 Trochodendron aralioides HOM05D000733 ORTHO05D000644 1.5e-06 57.4 155 25.8
Ah.08g210090 Amaranthus hybridus HOM05D000733 ORTHO05D000644 1.9e-06 57.0 155 29.7
ECA233G2410 Erigeron canadensis HOM05D000980 ORTHO05D000649 1.9e-06 57.0 168 24.4
Gohir.A04G058600 Gossypium hirsutum HOM05D000733 ORTHO05D000644 1.9e-06 57.0 153 26.1
Gohir.D04G094800 Gossypium hirsutum HOM05D000733 ORTHO05D000644 1.9e-06 57.0 153 26.1
Gorai.009G397400 Gossypium raimondii HOM05D000733 ORTHO05D000644 1.9e-06 57.0 153 26.1
Phvul.009G258400 Phaseolus vulgaris HOM05D000733 ORTHO05D000644 1.9e-06 57.0 162 24.7
TPR.G2796 Trifolium pratense HOM05D000733 ORTHO05D000644 1.9e-06 57.0 153 27.5
BcaC07g39612 Brassica carinata HOM05D000733 ORTHO05D000644 2.5e-06 56.6 160 26.2
C08p27710 Brassica napus HOM05D000733 ORTHO05D000644 2.5e-06 56.6 160 26.2
BolC8t50391H Brassica oleracea HOM05D000733 ORTHO05D000644 2.5e-06 56.6 160 26.2
BraA09t40017Z Brassica rapa HOM05D000733 ORTHO05D000644 2.5e-06 56.6 160 26.2
Carub.0005s1886 Capsella rubella HOM05D000733 ORTHO05D000644 2.5e-06 56.6 162 27.8
CiPaw.09G020200 Carya illinoinensis HOM05D000733 ORTHO05D000644 2.5e-06 56.6 174 25.9
Migut.N02461 Erythranthe guttata HOM05D000733 ORTHO05D000644 2.5e-06 56.6 165 24.2
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 2.5e-06 56.6 149 26.8
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 2.5e-06 56.6 149 26.8
Psat3g029600 Pisum sativum HOM05D000733 ORTHO05D000644 2.5e-06 56.6 153 27.5
EL10Ac7g16315 Beta vulgaris HOM05D000733 ORTHO05D000644 3.3e-06 56.2 153 28.8
BcaB01g00363 Brassica carinata HOM05D000733 ORTHO05D000644 3.3e-06 56.2 160 25.6
BcaB06g25595 Brassica carinata HOM05D000733 ORTHO05D000644 3.3e-06 56.2 170 29.4
A09p45560 Brassica napus HOM05D000733 ORTHO05D000644 3.3e-06 56.2 158 25.9
Cfa003731 Carpinus fangiana HOM05D000733 ORTHO05D000644 3.3e-06 56.2 164 26.8
Glyma.07G049300 Glycine max HOM05D000733 ORTHO05D000644 3.3e-06 56.2 172 23.8
Lj1g0007838 Lotus japonicus HOM05D000733 ORTHO05D000644 3.3e-06 56.2 148 28.4
Lj1g0025921 Lotus japonicus HOM05D000733 ORTHO05D000644 3.3e-06 56.2 153 24.8
Lalb_Chr15g0076561 Lupinus albus HOM05D000733 ORTHO05D000644 3.3e-06 56.2 153 24.8
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 4.3e-06 55.8 197 22.3
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 4.3e-06 55.8 197 22.3
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 4.3e-06 55.8 197 22.3
AUR62001542 Chenopodium quinoa HOM05D000733 ORTHO05D000644 4.3e-06 55.8 153 28.8
Glyma.03G201600 Glycine max HOM05D000733 ORTHO05D000644 4.3e-06 55.8 151 27.2
Manes.05G016100 Manihot esculenta HOM05D000733 ORTHO05D000644 4.3e-06 55.8 147 25.9
Sabra01G0157200 Salix brachista HOM05D002137 ORTHO05D002144 4.3e-06 55.8 151 22.5
Sed0014685 Sechium edule HOM05D000980 ORTHO05D000649 4.3e-06 55.8 166 24.7
CiPaw.01G224800 Carya illinoinensis HOM05D002137 ORTHO05D002144 5.6e-06 55.5 151 23.2
CiPaw.10G016600 Carya illinoinensis HOM05D000733 ORTHO05D000644 5.6e-06 55.5 150 26.7
FAN09G1325 Fragaria x ananassa HOM05D002137 ORTHO05D002144 5.6e-06 55.5 171 25.1
Glyma.02G197600 Glycine max HOM05D000733 ORTHO05D000644 5.6e-06 55.5 153 28.8
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 5.6e-06 55.5 172 27.3
Nn3g18791 Nelumbo nucifera HOM05D000733 ORTHO05D000644 5.6e-06 55.5 163 25.2
Sed0003594 Sechium edule HOM05D000733 ORTHO05D000644 5.6e-06 55.5 155 25.8
TWI77G0547 Tripterygium wilfordii HOM05D000733 ORTHO05D000644 5.6e-06 55.5 153 25.5
VMungo1383G0886 Vigna mungo HOM05D000733 ORTHO05D000644 5.6e-06 55.5 151 27.2
CSS0031720 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000644 7.3e-06 55.1 167 24.6
Cfa016684 Carpinus fangiana HOM05D000733 ORTHO05D000644 7.3e-06 55.1 163 25.2
Duzib093G0777 Durio zibethinus HOM05D000733 ORTHO05D000644 7.3e-06 55.1 151 27.2
FAN02G3113 Fragaria x ananassa HOM05D002137 ORTHO05D002144 7.3e-06 55.1 171 24.6
Gohir.A09G134901 Gossypium hirsutum HOM05D000733 ORTHO05D000644 7.3e-06 55.1 155 27.1
Lj5g0000988 Lotus japonicus HOM05D000733 ORTHO05D000644 7.3e-06 55.1 153 26.1
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 7.3e-06 55.1 179 21.8
Medtr7g118270 Medicago truncatula HOM05D000733 ORTHO05D000644 7.3e-06 55.1 153 26.1
Phvul.004G148800 Phaseolus vulgaris HOM05D000980 ORTHO05D000649 7.3e-06 55.1 178 26.4
Psat3g154840 Pisum sativum HOM05D002137 ORTHO05D002144 7.3e-06 55.1 155 21.9
Psat5g290120 Pisum sativum HOM05D002137 ORTHO05D002144 7.3e-06 55.1 149 21.5
Psat6g085680 Pisum sativum HOM05D000733 ORTHO05D000644 7.3e-06 55.1 155 27.7
Sabra14G0078300 Salix brachista HOM05D000733 ORTHO05D000644 7.3e-06 55.1 167 25.7
VMungo1309G0551 Vigna mungo HOM05D000733 ORTHO05D000644 7.3e-06 55.1 162 24.7
Gohir.A01G202000 Gossypium hirsutum HOM05D000733 ORTHO05D000644 9.6e-06 54.7 155 27.7
Gohir.D09G131500 Gossypium hirsutum HOM05D000733 ORTHO05D000644 9.6e-06 54.7 155 27.1
Gorai.006G150100 Gossypium raimondii HOM05D000733 ORTHO05D000644 9.6e-06 54.7 155 27.1
Lalb_Chr02g0154501 Lupinus albus HOM05D000733 ORTHO05D000644 9.6e-06 54.7 153 26.8
Nitab4.5_0000020g0130 Nicotiana tabacum HOM05D000733 ORTHO05D000644 9.6e-06 54.7 189 24.3
Nitab4.5_0003578g0010 Nicotiana tabacum HOM05D000733 ORTHO05D000644 9.6e-06 54.7 187 24.6
PSO478G3050 Papaver somniferum HOM05D000733 ORTHO05D000644 9.6e-06 54.7 165 28.5
Sabra06G0157300 Salix brachista HOM05D000733 ORTHO05D000644 9.6e-06 54.7 158 24.7
THA.LOC104825744 Tarenaya hassleriana HOM05D000733 ORTHO05D000644 9.6e-06 54.7 169 25.4


User provided reference genes

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