Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.3e-257 891.7 450 100.0
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 8.8e-225 783.5 449 89.1
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 1.5e-224 782.7 449 88.6
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 3.8e-212 741.5 446 84.3
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 9.1e-206 720.3 441 82.3
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.2e-202 709.9 439 81.3
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.2e-192 676.8 439 78.4
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 1.2e-192 676.8 439 78.4
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 9.5e-171 604.0 434 68.4
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 1.6e-170 603.2 415 75.4
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 8.1e-170 600.9 434 68.2
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.1e-169 600.5 436 68.1
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 1.7e-167 593.2 434 67.1
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 4.1e-166 588.6 434 67.3
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 4.6e-165 585.1 433 67.9
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.0e-164 583.9 433 66.3
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.7e-164 583.2 435 66.9
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.5e-163 579.3 435 66.4
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.6e-162 575.5 435 66.9
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 8.1e-162 574.3 435 64.8
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.4e-161 573.5 435 66.9
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.4e-161 573.5 435 66.7
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 4.0e-161 572.0 436 66.5
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 5.2e-161 571.6 440 65.7
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.8e-160 568.2 436 64.4
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.7e-159 566.6 444 65.3
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.2e-159 566.2 444 65.3
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 4.9e-159 565.1 504 58.7
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 6.4e-159 564.7 429 66.4
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 6.4e-159 564.7 442 64.3
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 1.2e-157 560.5 410 67.3
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 4.6e-157 558.5 437 63.6
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 6.0e-157 558.1 436 63.8
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.7e-156 556.6 461 63.1
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 2.3e-156 556.2 432 64.1
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 2.3e-156 556.2 441 63.0
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 8.7e-156 554.3 437 63.8
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.5e-155 553.5 436 62.6
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 3.3e-155 552.4 437 62.7
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 3.3e-155 552.4 437 62.7
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.3e-155 552.4 436 62.6
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.3e-155 552.4 429 62.5
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 9.6e-155 550.8 487 58.9
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 1.6e-154 550.1 438 62.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 4.7e-154 548.5 437 62.7
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.1e-154 547.7 461 62.7
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 4.0e-153 545.4 458 60.7
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 9.0e-153 544.3 437 62.5
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 9.0e-153 544.3 436 62.2
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 4.9e-151 538.5 435 61.6
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.1e-150 537.3 443 61.6
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.4e-150 536.2 463 60.3
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.2e-150 535.4 435 63.4
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 5.4e-150 535.0 432 60.9
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 7.1e-150 534.6 382 68.3
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 6.0e-149 531.6 434 63.4
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 7.8e-149 531.2 435 59.3
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.0e-148 529.3 432 60.9
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 5.1e-148 528.5 435 61.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 6.6e-148 528.1 433 61.4
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.1e-147 527.3 475 55.8
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.1e-147 527.3 439 60.6
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.5e-147 526.9 381 68.0
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 1.9e-147 526.6 546 51.6
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 2.8e-146 522.7 471 57.7
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 8.1e-146 521.2 444 61.0
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.4e-145 519.6 436 61.0
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 2.6e-144 516.2 430 62.1
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 5.8e-144 515.0 359 69.1
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.9e-143 512.7 384 67.2
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.9e-142 510.0 384 65.4
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 3.5e-141 505.8 385 63.9
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 4.6e-141 505.4 432 60.4
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 7.9e-141 504.6 439 56.7
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.6e-138 496.9 380 67.4
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.8e-138 496.1 559 49.9
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 3.4e-136 489.2 436 56.0
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.4e-134 483.8 463 55.9
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 2.7e-133 479.6 440 55.0
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 8.7e-132 474.6 428 55.1
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.2e-125 454.1 424 55.7
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.3e-124 450.7 280 82.5
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.0e-119 434.5 463 54.2
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.5e-118 429.9 316 69.0
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 3.2e-118 429.5 348 65.2
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 2.3e-116 423.3 318 64.8
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 3.0e-116 422.9 404 55.0
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.2e-112 411.0 386 54.9
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 5.5e-110 402.1 426 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 5.7e-107 392.1 439 46.7
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.2e-104 384.4 425 46.1
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 8.5e-103 378.3 438 45.9
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.2e-101 374.4 313 60.7
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 3.6e-101 372.9 287 61.7
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.7e-99 364.8 291 60.8
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.7e-87 327.4 251 64.1
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 6.5e-87 325.5 361 47.1
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 6.3e-82 308.9 283 56.2
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 2.2e-66 257.3 155 83.9
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 3.2e-65 253.4 159 81.8
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 1.9e-57 227.6 196 58.2
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.2e-56 224.9 285 46.3
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.0e-55 221.9 178 63.5
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 5.6e-54 216.1 126 87.3
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 7.6e-51 205.7 147 72.8
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.3e-47 194.1 332 35.8
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.1e-46 191.8 305 38.7
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.1e-44 185.3 129 72.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.8e-44 184.5 144 67.4
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.6e-38 162.2 128 63.3
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 6.2e-37 159.5 200 44.0
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 8.4e-34 149.1 93 75.3
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 4.8e-29 133.3 94 66.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 6.2e-29 132.9 96 60.4
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.8e-28 131.3 97 68.0
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 3.8e-26 123.6 358 30.2
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 6.0e-24 116.3 162 42.6
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 1.6e-13 81.6 51 76.5
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 9.0e-12 75.9 55 61.8
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 2.9e-10 70.9 63 50.8
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 3.8e-10 70.5 70 51.4
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 8.4e-10 69.3 66 56.1
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 8.4e-10 69.3 66 56.1
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.1e-09 68.9 66 53.0
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 3.3e-06 57.4 59 50.8


User provided reference genes

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