Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 0.0e+00 1119.8 572 100.0
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 1.2e-308 1062.4 575 95.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.3e-281 972.6 573 87.6
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 4.5e-266 921.0 510 91.6
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.1e-243 846.7 571 76.0
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.4e-243 846.3 572 76.9
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.8e-243 845.9 570 76.8
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 4.1e-243 844.7 560 77.7
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 6.5e-241 837.4 565 77.0
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 3.9e-238 828.2 580 75.3
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.2e-231 806.6 568 73.1
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.0e-231 803.9 536 76.9
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.0e-231 803.9 536 76.9
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.8e-230 802.7 573 73.8
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 4.0e-230 801.6 566 73.1
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.4e-229 798.1 574 71.4
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.7e-228 796.2 574 72.3
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.7e-228 795.0 563 73.7
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 8.2e-228 793.9 572 73.1
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.1e-227 792.0 504 77.4
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.1e-227 792.0 577 71.6
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.5e-226 788.1 578 71.5
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 5.9e-226 787.7 493 79.7
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 5.9e-226 787.7 540 73.9
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.7e-226 787.3 574 71.1
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.3e-225 786.6 589 69.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.3e-225 786.6 574 70.9
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.2e-225 785.8 571 72.3
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 2.2e-225 785.8 528 76.7
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.8e-225 785.0 577 70.0
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 8.5e-225 783.9 543 73.8
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.1e-224 783.5 502 77.3
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.5e-224 783.1 508 78.0
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.5e-224 783.1 582 71.0
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.9e-224 782.7 569 71.7
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.2e-224 781.9 506 77.5
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.2e-223 780.0 584 69.7
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.7e-223 778.9 573 70.0
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 4.7e-223 778.1 555 73.5
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 6.1e-223 777.7 505 77.2
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 8.0e-223 777.3 567 71.8
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.4e-222 776.5 548 72.8
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 4.0e-222 775.0 573 70.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 6.8e-222 774.2 501 77.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.4e-221 771.9 573 70.7
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 9.8e-221 770.4 564 70.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.3e-220 770.0 568 70.4
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.4e-219 766.5 496 75.6
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.4e-219 765.8 571 69.4
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.0e-217 760.4 486 77.0
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.8e-217 758.4 490 76.1
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 5.0e-217 758.1 515 73.6
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.9e-216 756.1 572 68.5
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 2.5e-216 755.7 568 70.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.4e-214 750.0 574 67.4
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 5.2e-214 748.0 496 76.6
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 1.2e-213 746.9 497 75.1
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.4e-213 745.0 486 75.3
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.3e-212 743.4 573 66.5
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.7e-212 741.9 486 75.9
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 3.7e-212 741.9 579 67.2
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.1e-211 740.3 500 73.4
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 1.1e-211 740.3 490 74.7
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 3.1e-211 738.8 597 63.8
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.1e-211 738.8 568 68.3
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 6.6e-209 731.1 584 65.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.5e-208 729.9 486 74.1
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 4.3e-208 728.4 475 75.4
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.6e-207 726.5 487 72.5
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 2.8e-207 725.7 588 64.5
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.8e-207 725.7 593 64.2
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.6e-207 725.3 504 72.4
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 4.7e-207 724.9 588 64.3
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 6.1e-207 724.5 508 70.1
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 6.1e-207 724.5 599 63.6
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.8e-206 723.0 500 72.0
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 6.8e-206 721.1 590 63.9
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 8.9e-206 720.7 501 71.3
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.0e-205 719.5 482 73.4
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.6e-205 719.2 483 73.5
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 1.3e-204 716.8 470 74.0
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.7e-204 716.5 446 79.1
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.7e-204 715.3 505 71.3
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.9e-204 714.9 505 71.3
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 7.0e-203 711.1 562 65.5
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 7.0e-203 711.1 489 72.0
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.6e-202 709.9 497 73.4
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.5e-202 708.8 557 66.4
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.5e-202 708.8 557 66.4
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 6.0e-202 708.0 499 70.7
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 7.8e-202 707.6 577 64.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.2e-199 700.3 561 66.0
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.8e-198 694.5 443 77.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.0e-197 693.0 490 71.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.6e-197 692.6 563 65.0
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.5e-194 682.2 490 70.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 1.7e-193 679.9 552 63.9
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 4.3e-192 675.2 410 81.0
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 5.2e-190 668.3 507 66.9
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.6e-185 651.4 489 64.4
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.2e-183 647.1 543 60.0
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.6e-183 646.7 489 64.4
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.6e-183 645.6 489 64.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.2e-180 636.3 572 61.2
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.6e-178 630.2 575 61.0
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 6.0e-178 628.2 482 65.8
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.3e-177 627.1 480 68.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 8.7e-177 624.4 508 62.8
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 8.1e-175 617.8 448 70.8
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.4e-174 617.1 501 61.5
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 5.6e-168 595.1 484 62.6
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 6.0e-162 575.1 479 63.3
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 9.0e-158 561.2 475 56.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 8.4e-156 554.7 474 56.5
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 3.9e-153 545.8 478 56.5
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 5.6e-152 542.0 471 55.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.8e-142 510.4 482 51.9
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.0e-140 504.6 449 60.1
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 4.5e-133 479.2 319 76.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 7.7e-133 478.4 405 63.2
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.9e-129 466.1 329 72.6
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 3.3e-128 463.0 507 48.9
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.9e-123 447.2 512 45.7
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 7.8e-69 265.8 215 62.3
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.2e-64 251.9 476 32.6
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.1e-53 214.5 140 72.9
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.7e-42 177.2 426 27.5
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.4e-38 165.2 115 73.0
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 3.9e-28 130.6 72 80.6
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 8.5e-23 112.8 80 76.2
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.0e-15 89.4 429 24.7
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 5.0e-15 87.0 58 72.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 3.9e-12 77.4 444 25.5
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.5e-06 58.2 28 92.9


User provided reference genes

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