Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 9.9e-242 839.7 432 100.0
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 3.3e-189 665.2 434 79.7
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 1.5e-176 623.2 430 77.4
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 2.3e-153 546.2 394 70.3
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 5.0e-153 545.0 392 70.7
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 3.6e-151 538.9 397 70.0
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 8.0e-151 537.7 396 69.9
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 2.3e-150 536.2 396 69.7
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 1.2e-149 533.9 395 69.6
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 2.7e-146 522.7 396 68.4
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 2.7e-146 522.7 398 66.3
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.9e-144 516.5 396 67.4
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 3.3e-144 515.8 392 66.6
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 9.5e-144 514.2 395 65.8
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 9.5e-144 514.2 392 65.8
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 1.6e-143 513.5 395 65.8
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 3.6e-143 512.3 389 65.6
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 3.6e-143 512.3 417 64.5
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 1.4e-142 510.4 393 65.9
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 2.3e-142 509.6 392 65.3
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 7.5e-141 504.6 381 66.9
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 8.3e-140 501.1 392 66.1
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 1.6e-138 496.9 389 65.0
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 4.3e-136 488.8 391 63.2
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 4.3e-136 488.8 390 64.1
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 9.5e-136 487.6 391 62.9
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 4.7e-135 485.3 389 63.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 1.1e-134 484.2 395 62.0
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 1.4e-134 483.8 391 61.9
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.8e-134 483.4 391 61.1
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 3.1e-134 482.6 390 62.8
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 2.0e-133 479.9 396 62.4
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 3.4e-133 479.2 391 61.6
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 3.4e-133 479.2 337 72.1
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.4e-133 478.8 400 60.0
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 7.6e-133 478.0 391 62.7
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.3e-132 477.2 392 63.0
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.3e-132 477.2 405 60.0
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 1.7e-132 476.9 392 62.8
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 2.2e-132 476.5 391 61.6
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 2.9e-132 476.1 396 61.4
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.9e-132 475.3 391 61.4
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 6.4e-132 474.9 390 62.6
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 1.1e-131 474.2 405 59.5
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.4e-131 473.8 390 62.6
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.9e-131 473.4 391 61.4
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-131 472.6 399 61.7
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.2e-131 472.2 397 62.0
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 9.2e-131 471.1 402 60.7
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 7.8e-130 468.0 396 63.1
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 7.8e-130 468.0 396 63.1
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 7.8e-130 468.0 396 63.1
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 7.8e-130 468.0 396 63.1
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 7.8e-130 468.0 388 61.6
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 7.8e-130 468.0 400 59.2
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 3.0e-129 466.1 390 60.3
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.1e-128 464.2 394 58.9
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 7.3e-128 461.5 400 58.0
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.6e-127 460.3 360 64.4
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.8e-127 459.5 409 57.0
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 3.6e-127 459.1 390 59.2
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.1e-126 457.6 406 56.9
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 2.4e-126 456.4 404 57.7
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 9.0e-126 454.5 410 56.3
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 2.0e-125 453.4 390 61.3
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 2.6e-125 453.0 349 65.6
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 4.4e-125 452.2 394 60.4
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 9.9e-125 451.1 406 56.2
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.7e-124 450.3 396 57.6
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 1.7e-124 450.3 391 58.1
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.7e-124 450.3 389 58.4
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.7e-124 450.3 388 59.3
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.2e-124 449.9 390 61.3
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.9e-124 449.5 419 54.9
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 4.9e-124 448.7 417 55.9
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 1.9e-123 446.8 429 54.8
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 1.9e-123 446.8 399 56.4
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 7.8e-122 441.4 388 58.0
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.0e-121 441.0 385 59.5
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.7e-121 440.3 399 58.9
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.0e-121 439.5 408 57.6
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 3.9e-121 439.1 390 57.7
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.1e-120 437.6 390 59.0
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.6e-119 432.6 412 56.1
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 4.8e-119 432.2 393 57.8
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 8.1e-119 431.4 399 57.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 8.1e-119 431.4 392 56.9
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.2e-117 427.6 388 57.0
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.3e-116 424.1 391 57.5
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 2.2e-116 423.3 399 55.6
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 3.8e-116 422.5 389 58.4
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 8.4e-116 421.4 399 54.4
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 8.4e-116 421.4 399 54.4
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 8.4e-116 421.4 399 54.4
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.4e-115 420.6 390 54.6
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 7.1e-115 418.3 390 56.4
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 9.3e-115 417.9 378 59.3
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.6e-114 417.2 405 55.3
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 1.3e-113 414.1 347 59.9
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.8e-113 413.7 400 57.0
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.8e-113 413.7 390 55.9
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-113 413.3 404 55.7
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 3.9e-113 412.5 352 61.9
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 6.7e-113 411.8 359 58.5
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 1.4e-110 404.1 355 58.6
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 3.4e-109 399.4 332 61.7
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 7.6e-109 398.3 405 52.1
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 8.4e-108 394.8 426 50.5
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.1e-107 394.4 391 54.2
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-106 391.0 429 51.0
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 1.6e-106 390.6 399 50.6
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.4e-104 381.7 388 53.4
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 7.4e-104 381.7 466 47.0
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 3.7e-103 379.4 277 66.4
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 5.3e-102 375.6 390 51.3
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 6.9e-102 375.2 397 52.1
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.6e-101 373.2 416 51.7
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.0e-100 371.3 400 52.0
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.3e-100 370.9 390 52.1
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 2.2e-100 370.2 409 50.4
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.4e-99 367.5 378 52.9
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 2.7e-98 363.2 390 50.5
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 2.7e-98 363.2 336 55.7
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 6.7e-97 358.6 285 62.1
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 8.7e-97 358.2 419 48.2
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.3e-96 355.9 400 51.5
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 7.4e-96 355.1 389 47.8
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.3e-95 354.4 389 47.8
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.9e-93 345.5 337 53.4
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 2.9e-92 343.2 351 51.3
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 2.1e-90 337.0 230 73.9
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.0e-89 333.2 393 44.3
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.1e-86 324.7 397 43.1
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 3.1e-86 323.2 381 46.7
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.0e-81 308.1 247 62.3
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 7.4e-80 302.0 226 66.8
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 7.0e-78 295.4 336 49.4
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.9e-75 287.3 233 62.7
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 9.7e-72 275.0 321 47.4
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 8.2e-71 271.9 332 44.6
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 5.3e-70 269.2 345 43.8
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 5.5e-67 259.2 276 49.3
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.1e-66 255.8 345 41.7
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 8.0e-66 255.4 344 41.9
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 1.4e-65 254.6 174 70.7
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 8.8e-65 251.9 223 58.3
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.6e-64 250.4 152 79.6
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 5.9e-61 239.2 225 55.6
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 5.5e-59 232.6 141 80.1
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 3.6e-58 229.9 140 80.0
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 4.7e-58 229.6 345 39.1
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 3.4e-56 223.4 151 70.9
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 3.7e-55 219.9 172 62.8
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 4.1e-54 216.5 144 72.9
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 1.7e-52 211.1 162 66.0
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-52 211.1 232 50.0
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 6.6e-52 209.1 188 59.6
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 4.2e-51 206.5 332 37.0
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 5.9e-45 186.0 274 43.1
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 2.3e-44 184.1 161 59.0
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.3e-43 180.3 184 52.2
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 2.0e-40 171.0 176 52.3
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.7e-39 166.8 161 57.8
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 4.6e-37 159.8 83 94.0
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 2.5e-35 154.1 421 27.6
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 2.5e-35 154.1 162 49.4
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 3.1e-33 147.1 142 53.5
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 1.2e-29 135.2 84 77.4
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.6e-29 134.8 165 44.2
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.1e-28 129.8 141 46.8
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 7.3e-27 125.9 144 47.9
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 3.2e-22 110.5 86 58.1
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-20 104.8 142 43.0
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.4e-15 86.3 66 59.1
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 1.1e-14 85.5 50 82.0
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.0e-12 77.4 76 47.4
CARHR060240 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.6e-08 64.3 120 40.0
Nitab4.5_0003945g0170 Nicotiana tabacum HOM05D002585 ORTHO05D023007 8.4e-07 59.3 52 53.8
PGSC0003DMG400019013 Solanum tuberosum HOM05D002585 ORTHO05D023007 1.4e-06 58.5 52 53.8
PGSC0003DMG402009595 Solanum tuberosum HOM05D002585 ORTHO05D023007 7.1e-06 56.2 47 55.3


User provided reference genes

Program Settings