Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 2.4e-58 228.4 100 100.0
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 1.9e-55 218.8 97 96.9
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 5.2e-53 210.7 100 89.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 3.5e-49 198.0 100 83.0
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 1.0e-48 196.4 100 81.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 5.1e-48 194.1 100 81.0
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 4.3e-47 191.0 100 79.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 5.6e-47 190.7 99 77.8
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.2e-46 189.5 100 78.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.2e-46 189.5 100 78.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 1.2e-46 189.5 100 78.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 2.1e-46 188.7 100 79.0
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 3.6e-46 188.0 100 80.0
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 3.6e-46 188.0 100 78.0
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 6.2e-46 187.2 100 79.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 8.1e-46 186.8 100 78.0
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 4.0e-45 184.5 100 75.0
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 79.0
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 77.0
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 77.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 77.0
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 2.6e-44 181.8 100 76.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 2.6e-44 181.8 100 80.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 3.4e-44 181.4 98 77.6
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 76.0
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 4.4e-44 181.0 100 75.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 4.4e-44 181.0 100 75.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 7.5e-44 180.3 98 77.6
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 7.5e-44 180.3 100 79.0
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 1.3e-43 179.5 98 77.6
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 1.3e-43 179.5 100 80.0
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 1.3e-43 179.5 100 75.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 75.0
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 3.7e-43 177.9 100 79.0
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 75.0
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 74.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 4.9e-43 177.6 100 74.0
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 6.4e-43 177.2 100 79.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 6.4e-43 177.2 100 79.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 1.1e-42 176.4 100 71.0
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 1.1e-42 176.4 100 78.0
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 1.4e-42 176.0 98 76.5
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 1.4e-42 176.0 100 75.0
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 78.0
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 75.0
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 1.9e-42 175.6 100 73.0
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 78.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 78.0
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 78.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 78.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 78.0
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 2.4e-42 175.3 95 77.9
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 2.4e-42 175.3 100 72.0
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 3.2e-42 174.9 100 73.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 4.1e-42 174.5 100 75.0
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 4.1e-42 174.5 100 71.0
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 76.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 1.2e-41 172.9 100 75.0
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 1.6e-41 172.6 100 75.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 2.1e-41 172.2 100 76.0
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 2.7e-41 171.8 100 70.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 6.0e-41 170.6 100 73.0
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 1.0e-40 169.9 100 73.0
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.3e-40 169.5 98 70.4
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 3.0e-40 168.3 98 69.4
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 3.9e-40 167.9 100 71.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 5.1e-40 167.5 88 80.7
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 8.6e-40 166.8 100 67.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 8.6e-40 166.8 98 69.4
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 1.9e-39 165.6 100 70.0
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 2.5e-39 165.2 100 68.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 2.5e-39 165.2 100 68.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 2.5e-39 165.2 100 68.0
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 7.3e-39 163.7 100 72.0
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 6.2e-38 160.6 100 64.0
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 8.1e-38 160.2 100 69.0
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 1.4e-37 159.5 100 68.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 1.4e-37 159.5 100 68.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 2.4e-37 158.7 100 63.0
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 4.0e-37 157.9 99 66.7
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 8.9e-37 156.8 84 78.6
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 7.6e-36 153.7 99 65.7
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 1.3e-35 152.9 134 52.2
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 2.2e-35 152.1 98 64.3
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 3.2e-34 148.3 99 66.7
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 4.6e-33 144.4 88 72.7
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 1.0e-32 143.3 100 61.0
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 1.0e-32 143.3 100 63.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 1.0e-32 143.3 100 63.0
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 1.7e-32 142.5 100 60.0
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 4.3e-31 137.9 111 56.8
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 2.8e-30 135.2 170 42.4
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 2.0e-28 129.0 70 75.7
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 9.9e-28 126.7 101 58.4
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 8.1e-22 107.1 58 79.3
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 1.1e-21 106.7 102 53.9
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 9.0e-21 103.6 101 49.5
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 2.7e-17 92.0 100 45.0
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 2.0e-12 75.9 37 81.1
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 6.5e-11 70.9 31 90.3
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 5.1e-08 61.2 40 62.5
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 9.6e-07 57.0 79 34.2
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 1.3e-06 56.6 76 35.5
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 4.8e-06 54.7 76 34.2
CBR_g23007 Chara braunii HOM05D007373 ORTHO05D009192 6.2e-06 54.3 81 35.8


User provided reference genes

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