Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.8e-66 255.8 128 100.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 6.7e-45 184.1 123 78.0
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 4.3e-44 181.4 117 79.5
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.1e-37 157.9 115 71.3
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.7e-35 152.9 115 69.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.4e-34 149.8 119 65.5
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.9e-33 144.4 100 71.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 7.7e-33 144.1 127 59.1
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.5e-32 140.6 119 63.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-29 133.3 123 56.1
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.0e-29 132.1 124 51.6
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.0e-28 129.4 115 57.4
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.6e-28 129.0 124 52.4
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.3e-28 128.6 124 50.8
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 4.4e-28 128.3 123 52.8
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 7.4e-28 127.5 115 55.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 7.4e-28 127.5 123 52.8
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 7.4e-28 127.5 116 56.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 9.7e-28 127.1 123 51.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.3e-27 126.7 125 50.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.8e-27 125.6 125 50.4
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.8e-27 125.6 123 52.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.7e-27 125.2 123 52.8
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.7e-27 125.2 123 51.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.8e-27 124.8 125 51.2
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 4.8e-27 124.8 118 55.1
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 6.3e-27 124.4 124 50.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 6.3e-27 124.4 123 49.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.3e-27 124.4 123 52.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.3e-27 124.4 125 50.4
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.3e-27 124.4 123 51.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 6.3e-27 124.4 123 49.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 8.2e-27 124.0 124 50.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 8.2e-27 124.0 123 52.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 8.2e-27 124.0 124 50.8
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 8.2e-27 124.0 113 56.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 8.2e-27 124.0 113 56.6
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.1e-26 123.6 125 49.6
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.1e-26 123.6 123 54.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.1e-26 123.6 124 52.4
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.4e-26 123.2 123 50.4
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.4e-26 123.2 122 49.2
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.8e-26 122.9 124 50.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.8e-26 122.9 126 51.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.8e-26 122.9 123 51.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.4e-26 122.5 118 53.4
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.4e-26 122.5 124 50.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.4e-26 122.5 118 52.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.1e-26 122.1 113 54.9
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.1e-26 122.1 120 50.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.1e-26 122.1 126 49.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.1e-26 121.7 124 48.4
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 4.1e-26 121.7 115 51.3
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.1e-26 121.7 115 53.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 5.3e-26 121.3 123 48.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 5.3e-26 121.3 118 53.4
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.3e-26 121.3 115 53.0
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 5.3e-26 121.3 115 53.9
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.0e-26 120.9 123 49.6
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 9.1e-26 120.6 125 48.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 9.1e-26 120.6 110 53.6
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 9.1e-26 120.6 126 50.0
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-25 120.2 124 49.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.2e-25 120.2 125 48.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.2e-25 120.2 123 48.8
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.5e-25 119.8 123 52.8
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.0e-25 119.4 115 50.4
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-25 119.4 120 49.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.6e-25 119.0 118 52.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.6e-25 119.0 125 49.6
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.5e-25 118.6 118 51.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.5e-25 118.6 113 52.2
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.5e-25 118.2 115 53.0
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.5e-25 118.2 113 52.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 5.9e-25 117.9 124 47.6
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.9e-25 117.9 120 48.3
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 7.7e-25 117.5 115 53.0
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.7e-25 117.5 115 53.0
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.7e-25 117.5 115 53.0
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.7e-25 117.5 115 53.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.7e-25 117.5 125 46.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 7.7e-25 117.5 124 49.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.7e-25 117.5 114 50.9
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.0e-24 117.1 111 55.0
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-24 117.1 115 53.0
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.0e-24 117.1 115 53.0
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.0e-24 117.1 115 52.2
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.0e-24 117.1 123 48.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.3e-24 116.7 115 52.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.3e-24 116.7 124 50.8
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.3e-24 116.7 124 50.8
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-24 116.3 111 54.1
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.7e-24 116.3 123 47.2
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.9e-24 115.5 118 50.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 3.8e-24 115.2 113 50.4
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.0e-24 114.8 123 48.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.0e-24 114.8 113 52.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 8.5e-24 114.0 115 50.4
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 8.5e-24 114.0 115 50.4
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.5e-23 113.2 115 48.7
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.5e-23 112.5 105 54.3
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.5e-23 112.5 115 51.3
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.5e-23 112.5 115 49.6
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-23 112.5 123 45.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.2e-23 112.1 118 50.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 3.2e-23 112.1 123 48.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 5.5e-23 111.3 115 49.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 9.4e-23 110.5 124 47.6
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.1e-22 109.4 123 45.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.7e-22 109.0 95 58.9
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.7e-22 109.0 109 52.3
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.6e-22 108.6 113 51.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.7e-22 108.2 125 46.4
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 8.0e-22 107.5 115 45.2
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-21 107.1 123 48.0
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.3e-21 105.9 114 47.4
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.5e-20 103.2 89 60.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-20 103.2 122 45.9
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.4e-20 101.7 95 53.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.7e-20 101.3 101 50.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.7e-20 101.3 116 48.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 9.7e-20 100.5 95 52.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.7e-19 99.8 122 45.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.7e-19 99.8 116 45.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-18 97.1 96 50.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.4e-18 96.7 118 43.2
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.4e-18 96.7 118 44.9
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.4e-18 95.9 95 52.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.1e-18 95.5 103 46.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 7.0e-18 94.4 118 42.4
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-17 93.6 89 56.2
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.2e-17 93.6 89 56.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.6e-17 92.4 124 39.5
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.5e-17 91.7 101 47.5
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.2e-16 89.4 115 46.1
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.9e-16 89.0 85 52.9
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-15 86.7 101 45.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.5e-15 86.7 114 43.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.5e-15 84.7 106 43.4
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 7.2e-15 84.3 117 38.5
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.2e-14 83.6 88 51.1
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.7e-14 82.4 123 40.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.7e-14 82.4 90 47.8
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.7e-14 81.6 122 39.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.1e-14 81.3 91 45.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.3e-13 79.3 123 41.5
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.0e-13 79.0 120 36.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.0e-13 79.0 85 45.9
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.5e-12 76.6 85 44.7
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.7e-12 74.7 89 46.1
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-11 73.2 81 49.4
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.4e-10 70.1 75 53.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 5.0e-08 61.6 59 47.5
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 6.5e-08 61.2 51 56.9


User provided reference genes

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