Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 7.2e-33 143.3 70 100.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.0e-31 139.4 68 98.5
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.0e-31 139.4 68 98.5
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.9e-30 135.2 68 95.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.3e-30 134.4 70 94.3
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 4.3e-30 134.0 70 92.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 4.3e-30 134.0 70 94.3
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 5.7e-30 133.7 68 94.1
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.3e-29 132.5 70 92.9
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 2.8e-29 131.3 70 91.4
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 6.3e-29 130.2 70 90.0
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 8.2e-29 129.8 68 89.7
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 8.2e-29 129.8 68 89.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 3.1e-28 127.9 64 93.8
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 3.1e-28 127.9 66 90.9
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 3.4e-27 124.4 70 85.7
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 4.5e-27 124.0 65 92.3
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 2.5e-25 118.2 68 82.4
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.2e-25 117.9 68 79.4
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 3.2e-25 117.9 68 82.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 7.2e-25 116.7 68 80.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 7.2e-25 116.7 68 79.4
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 2.1e-24 115.2 73 76.7
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 2.7e-24 114.8 68 79.4
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 6.1e-24 113.6 68 77.9
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.4e-23 112.5 66 83.3
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.4e-23 112.5 72 77.8
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.8e-23 112.1 70 74.3
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.8e-23 112.1 67 76.1
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.3e-23 111.7 68 79.4
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.3e-23 111.7 69 76.8
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 3.0e-23 111.3 71 74.6
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 3.0e-23 111.3 68 76.5
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 3.9e-23 110.9 69 81.2
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 3.9e-23 110.9 69 79.7
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.1e-23 110.5 70 78.6
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.1e-23 110.5 68 76.5
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.1e-23 110.5 70 78.6
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 5.1e-23 110.5 74 75.7
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 5.1e-23 110.5 74 75.7
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 6.7e-23 110.2 70 75.7
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 6.7e-23 110.2 68 77.9
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.7e-23 110.2 68 75.0
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 8.8e-23 109.8 77 72.7
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 8.8e-23 109.8 68 73.5
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 8.8e-23 109.8 71 77.5
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.1e-22 109.4 68 75.0
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.1e-22 109.4 68 75.0
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.1e-22 109.4 68 75.0
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.1e-22 109.4 70 74.3
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.1e-22 109.4 68 75.0
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 1.1e-22 109.4 70 72.9
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.1e-22 109.4 64 78.1
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.5e-22 109.0 70 77.1
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 1.5e-22 109.0 64 78.1
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.0e-22 108.6 75 72.0
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 2.6e-22 108.2 66 80.3
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.6e-22 108.2 67 74.6
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.6e-22 108.2 67 74.6
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 2.6e-22 108.2 67 74.6
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 3.3e-22 107.8 70 74.3
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 3.3e-22 107.8 77 71.4
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 3.3e-22 107.8 77 71.4
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.3e-22 107.8 70 71.4
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 4.4e-22 107.5 77 70.1
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 4.4e-22 107.5 64 76.6
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 5.7e-22 107.1 59 83.1
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 5.7e-22 107.1 68 73.5
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 7.4e-22 106.7 70 70.0
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.7e-21 105.5 58 81.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 2.2e-21 105.1 68 72.1
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 2.2e-21 105.1 70 72.9
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 2.8e-21 104.8 70 72.9
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 3.7e-21 104.4 58 79.3
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 3.7e-21 104.4 58 81.0
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 4.8e-21 104.0 68 70.6
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 4.8e-21 104.0 70 71.4
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 6.3e-21 103.6 68 67.6
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 6.3e-21 103.6 68 70.6
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 8.2e-21 103.2 67 70.1
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.2e-21 103.2 58 77.6
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.4e-20 102.4 64 75.0
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 3.1e-20 101.3 58 79.3
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.0e-19 98.6 71 67.6
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 2.0e-19 98.6 69 69.6
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 2.0e-19 98.6 69 69.6
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 2.0e-19 98.6 70 64.3
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.0e-19 98.6 67 67.2
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 5.9e-19 97.1 68 66.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 7.7e-19 96.7 56 85.7
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 1.7e-18 95.5 58 75.9
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 5.0e-18 94.0 64 68.8
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 5.0e-18 94.0 64 68.8
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 8.5e-18 93.2 50 84.0
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 1.1e-17 92.8 70 67.1
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 5.5e-17 90.5 63 68.3
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.1e-16 88.6 49 79.6
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 1.8e-15 85.5 55 72.7
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.1e-09 66.2 49 63.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.0e-07 59.7 58 48.3
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 3.3e-06 54.7 37 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 4.4e-06 54.3 60 50.0


User provided reference genes

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