Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 8.2e-152 540.4 287 100.0
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 2.3e-125 452.6 288 84.7
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 4.3e-124 448.4 286 83.9
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 5.6e-124 448.0 285 83.5
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 7.3e-124 447.6 285 83.5
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 2.8e-123 445.7 286 82.9
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 3.6e-123 445.3 275 85.1
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 1.4e-122 443.4 288 83.7
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 2.3e-122 442.6 261 89.7
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 4.0e-122 441.8 261 88.9
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 6.8e-122 441.0 275 85.5
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 6.8e-122 441.0 270 87.0
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 8.9e-122 440.7 278 84.5
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 8.9e-122 440.7 287 83.3
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 1.5e-121 439.9 261 88.1
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 2.0e-121 439.5 270 86.7
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 2.0e-121 439.5 261 89.3
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 5.8e-121 438.0 260 87.3
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 1.7e-120 436.4 261 87.7
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 2.9e-120 435.6 271 85.2
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 2.9e-120 435.6 261 87.0
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.4e-119 433.3 261 87.0
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 3.2e-119 432.2 260 86.2
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 3.2e-119 432.2 261 87.4
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 4.1e-119 431.8 261 87.4
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 4.1e-119 431.8 261 87.7
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 5.4e-119 431.4 261 86.6
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 7.0e-119 431.0 261 86.6
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 9.2e-119 430.6 261 87.4
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 9.2e-119 430.6 260 87.7
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.6e-118 429.9 260 87.7
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.1e-118 429.5 261 86.2
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 2.7e-118 429.1 261 86.2
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.7e-118 429.1 261 85.8
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 3.5e-118 428.7 274 83.9
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 1.0e-117 427.2 261 84.3
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 1.3e-117 426.8 261 84.3
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 2.3e-117 426.0 259 84.9
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 3.9e-117 425.2 260 85.0
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 3.9e-117 425.2 261 85.1
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 5.1e-117 424.9 261 84.7
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 1.1e-116 423.7 260 86.9
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 1.1e-116 423.7 261 83.5
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 1.9e-116 422.9 260 85.8
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 1.9e-116 422.9 261 85.1
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 2.5e-116 422.5 255 85.9
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 4.3e-116 421.8 261 83.1
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 7.3e-116 421.0 258 86.0
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 7.3e-116 421.0 258 85.3
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 7.3e-116 421.0 275 81.5
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 2.8e-115 419.1 261 83.9
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 2.8e-115 419.1 258 85.3
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 3.6e-115 418.7 260 82.7
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 3.6e-115 418.7 260 82.7
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 4.7e-115 418.3 260 82.7
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 4.7e-115 418.3 261 82.0
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 4.7e-115 418.3 263 84.0
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 4.7e-115 418.3 263 81.7
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 8.1e-115 417.5 261 85.1
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 1.1e-114 417.2 263 82.1
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 1.1e-114 417.2 261 83.5
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 1.4e-114 416.8 263 81.7
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.4e-114 416.8 261 83.1
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 1.8e-114 416.4 260 82.3
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 1.8e-114 416.4 260 82.3
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 1.8e-114 416.4 261 82.8
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 1.8e-114 416.4 258 84.1
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 3.1e-114 415.6 263 81.4
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 4.0e-114 415.2 252 86.5
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 5.2e-114 414.8 261 80.8
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 5.2e-114 414.8 261 81.2
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 6.8e-114 414.5 260 84.2
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 8.9e-114 414.1 260 81.5
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 8.9e-114 414.1 260 81.5
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 8.9e-114 414.1 261 82.8
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 1.2e-113 413.7 261 84.3
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 1.5e-113 413.3 257 83.7
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 2.0e-113 412.9 261 82.0
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 1.3e-112 410.2 278 77.7
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 1.3e-112 410.2 257 82.9
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 2.9e-112 409.1 261 81.6
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 2.9e-112 409.1 258 83.7
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 8.3e-112 407.5 261 82.8
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 1.1e-111 407.1 254 85.4
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 4.1e-111 405.2 250 85.6
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 4.1e-111 405.2 260 81.5
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 4.1e-111 405.2 255 84.3
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 5.4e-111 404.8 261 80.1
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 9.2e-111 404.1 261 80.8
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 1.2e-110 403.7 263 79.8
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.2e-110 403.7 250 85.2
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 1.0e-109 400.6 255 83.1
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.7e-109 399.8 291 76.6
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.0e-109 399.1 250 82.0
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 3.9e-109 398.7 238 87.8
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 6.6e-109 397.9 261 78.9
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 1.9e-108 396.4 283 78.1
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 1.9e-108 396.4 258 79.1
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 5.6e-108 394.8 252 81.7
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 8.9e-106 387.5 255 80.4
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 1.5e-105 386.7 237 85.7
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 2.2e-104 382.9 268 72.0
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.1e-103 380.6 222 89.6
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 5.4e-103 378.3 253 77.9
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 9.2e-103 377.5 221 88.7
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.3e-101 373.6 264 72.7
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.1e-98 364.0 257 74.7
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 4.0e-98 362.1 264 70.1
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 2.6e-97 359.4 261 71.6
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 8.4e-96 354.4 261 74.7
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 7.8e-94 347.8 255 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 3.0e-93 345.9 253 70.0
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 6.9e-90 334.7 261 72.0
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.2e-88 329.7 254 68.1
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 1.5e-84 317.0 209 81.8
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 1.3e-83 313.9 254 66.9
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 5.1e-69 265.4 179 77.1
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-67 259.6 255 54.1
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 5.0e-64 248.8 151 85.4
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 5.0e-64 248.8 160 83.1
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.4e-63 247.3 259 57.1
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.1e-58 231.1 151 80.8
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 6.3e-51 205.3 235 45.1
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 4.5e-49 199.1 261 49.0
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 2.1e-46 190.3 253 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 3.1e-42 176.4 240 43.3
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 5.7e-36 155.6 84 92.9
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.3e-35 151.8 95 78.9
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.9e-33 145.6 240 36.7
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.2e-30 137.9 74 94.6
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.6e-28 130.2 72 91.7
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 3.7e-27 126.3 117 60.7
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 9.1e-26 121.7 239 35.6
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 7.2e-23 112.1 96 63.5
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 3.2e-10 70.1 72 59.7


User provided reference genes

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